Lolium rigidum (rigid ryegrass): 124671751
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Entry
124671751 CDS
T09103
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124671751
09123 Folding, sorting and degradation
03018 RNA degradation
124671751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124671751
03041 Spliceosome [BR:
lrd03041
]
124671751
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124671751
mRNA cycle factors
Stress granule specific factors
124671751
Spliceosome [BR:
lrd03041
]
Complex C
Other components
Complex C specific factors
124671751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_occluded
RRM_10
RRM_5
RRM_Nup35
RBD_DEAH11
RRM_7
RRM_YTH1
GH97_C
Motif
Other DBs
NCBI-GeneID:
124671751
NCBI-ProteinID:
XP_047064038
LinkDB
All DBs
Position
7:100252718..100257678
Genome browser
AA seq
658 aa
AA seq
DB search
MAAAVTANGGAAAAAVAAVPAPVGVGGPQPVATTSLYVGDLEASVTDAQLYELFSQAGQV
LSVRVCRDVNSRRSLGYAYVNFNNPMDAARAMEALNFAHLNNQPIRVMYSNRDPSSRRSG
SANIFIKNLDKTIDNKTLHDTFSAFGPILSCKVAMDDIGQSKGFGFVQYEKEESAQSAMK
GLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNNVFVKNLSESTTKEDLLKVFSEYGNIT
SAVVMVGMDGKSRCFGFINFESPDAAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKR
SFQQSMKDAADKYQGQNLYLKNLNDGISDDQLRELFSSFGKITSCKVMRDQNGVSKGSGF
VSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMRPVPMTPTMTPR
LPMYPPMAPLGQQVFYGQAPPAMMPPQPGYGYQQQLVPGMRPGGAHMPNYFVPVVQQGQQ
GPRPGMRRSGAGSAQGQQTPQPFQQQMVPRGRVYRYPPGPVRNMPEGQPMPGVGVGGMIQ
PYDMGSFPVRDAGLSPAAPMGTLTSNLANATPDQQRTLLGESLYPLVEALERNQAAKVTG
MLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQNPSAPTSQLAGLSLADNIIA
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggtgacggccaacggtggcgcggcggcggcggcggtggcggccgttccc
gcgccggtcggcgtcggcggcccgcagcccgtcgcgaccacgtcgctctacgtcggcgac
ctcgaggcgtccgtcaccgacgcgcagctctacgagctcttcagccaggccggccaggtg
ctgtccgtccgcgtctgcagggacgtcaactcgcgccgctccctcggatacgcctacgtc
aacttcaacaaccccatggatgctgcaagagcaatggaggcgctcaactttgctcatctc
aacaaccagcccatccgggtcatgtactccaaccgtgacccaagcagccgcagaagtgga
tctgcaaatatttttatcaagaacctcgacaaaacaattgacaacaagactctccatgat
acattctctgcgtttggtccaattctctcatgcaaggttgccatggatgatattggccaa
tccaaaggctttggctttgttcagtatgaaaaggaagagtctgcacagtctgccatgaaa
ggcctcaatggtatgcttatcaatgataagcctgtgtatgttggaccttttcttcgcaag
caagagagagacaattcctttgacaaggcaaagtttaacaatgtctttgtcaagaattta
tctgagtctaccacaaaagaggacctactcaaagtgttcagtgagtatggaaatattaca
agtgctgttgtcatggttggcatggatggcaaatcaaggtgcttcggcttcatcaatttt
gagagtccagatgctgctgctcgtgccgttgaggaacttaatggcaagaaaattaatgac
aaggagtggtatgttggaagagctcagaagaagtctgaaagagagatggacctgaagaga
agtttccagcagagcatgaaagatgcagctgataagtatcaaggacagaacttgtacttg
aagaatctgaatgatggcatttcagatgatcagctacgtgaactgttctctagctttggc
aaaatcacctcatgcaaggtaatgcgtgatcaaaatggtgtcagcaaggggtcaggcttt
gtttctttttctacccgtgaggaagcatctcaggctctaactgaaatgaatggcaaaatg
atatctggaaagccattgtatgtagcatttgcccaacgtaaggaagacagaaaagcaatg
ttacaggctcagttctctcagatgcgtcctgtaccgatgacacctaccatgactcctcga
cttcccatgtaccctcccatggctcctcttgggcagcaagtcttctatgggcaagctcca
cctgctatgatgccccctcagccgggatacggttaccagcaacagcttgttcctggcatg
aggcctggcggtgcccatatgcctaattactttgttccagttgtccaacaaggccagcag
ggtccacgcccaggtatgaggcgctctggtgctgggtctgcgcagggacagcaaactcct
cagccatttcagcaacagatggttccaagaggacgcgtctaccggtacccgcctggacct
gtacgtaacatgcctgagggtcaaccgatgccaggagttggtgttggaggtatgattcag
ccatacgatatgggaagcttccctgtgcgagatgctggcttgtcacctgctgctccaatg
ggaactctgacatctaaccttgcaaatgctactccagaccaacaaagaacgttacttgga
gaaagcctctatccacttgttgaggcactggaacgcaaccaagctgcaaaggtcactggc
atgcttctggagatggaccagacggaggttctacacctgctcgagtctccagaggctctg
aagtcgaaggttgccgaggcaatggatgttctgcgcaacgtggctcagcagcagaatccg
agcgctcctaccagccaacttgctgggctatcactggccgacaacattatcgcttag
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integrated database retrieval system
