Lolium rigidum (rigid ryegrass): 124671850
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Entry
124671850 CDS
T09103
Name
(RefSeq) SWI/SNF complex subunit SWI3A homolog
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
124671850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124671850
03036 Chromosome and associated proteins [BR:
lrd03036
]
124671850
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
124671850
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
124671850
PBAF complex
124671850
GBAF(ncBAF) complex
124671850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
Acid_phosphat_B
Lipocalin_5
Motif
Other DBs
NCBI-GeneID:
124671850
NCBI-ProteinID:
XP_047064127
LinkDB
All DBs
Position
7:complement(112064501..112070508)
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AA seq
559 aa
AA seq
DB search
MSPAAASGEAPPPPRPARELYTIPASSSWFRWDDIHDAERRALPDFFGGAGGSGVGTASR
NPRIYREYRDYIIAKYREDPARRLTFTEVRRALVGDASLLRKLFGFLDSHGLINFSATSP
RPAAPRPGVGADAVLEAPLGLQVTPRPPPSFLEERLGGGGGSGEGVFRLPQLTSYSDVFG
EWAPGKGPICGFCGDECQDGKVETLKDGFKVCSKCCKTNSDSKEESNKFSDVKQENSDNH
ASSAWTDAETLLLLEGVLKHGDDWDLIAQHVRTKNKSECIARLIQLPFGEHMLGTINGKP
DSRFQANQTTDGKTNHCIVKEASSQSTKVVDGMQIDGEEDGADKLVEEHPSKRRRLCSSI
DATGSLMEQLALLTTAVSPDVVAAAAAASIKALGDENPQAKKAFHLSEKEYQGKSFPSNR
VQESNCNVGDQEVEMHGKTVSDKKMEKKFISTAYQVRAAVGTAVGVAAARAKMLADQEER
EMELLMASIIETQLRKIQYKIKHFEELELIMDQEYTTIQEIKESLIKDWLKVLKRAFETG
APIQRDEVLTKLFLSKSAP
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgtcgccggcggccgcctccggcgaggcgccgccgccgccgcgcccggcgcgcgagctc
tacaccatcccggcctcctcaagttggttccgctgggacgacatccacgacgcggagcgg
cgggcgctgccggacttcttcggcggcgcgggcggcagcggcgtgggcacggcgtcgcgg
aacccgcggatctaccgcgagtaccgcgactacatcatcgccaagtaccgggaggacccg
gcgcgccgcctcaccttcaccgaggtgcgcagggcgctcgtcggcgacgcctcgctcctc
cgcaagctcttcggcttcctcgactcccacggcctcatcaacttctccgccacctccccc
cgccccgccgcgccgcggcccggggtcggggccgacgccgtcttagaggcgcccctgggg
ttgcaggtcacgccgcgcccgccgccctccttcctggaggagaggctcggtggaggagga
gggagcggggagggcgtgttccgcttgccgcagctcacctcctacagcgacgtgttcggg
gagtgggcgcctgggaagggccctatatgtggcttctgcggcgacgagtgccaggatggg
aaggtggagacgttgaaggatggttttaaagtatgttcgaagtgttgcaaaaccaatagt
gatagtaaggaggaatcaaataaattctctgatgttaaacaggagaactctgacaaccat
gcttctagtgcatggacagatgcagagacactactccttttagaaggtgtcctaaaacat
ggagatgactgggatctcattgcccagcatgtccgcacaaagaataaatcggaatgcatt
gctaggcttattcagttgccttttggtgaacatatgctgggtaccataaatggtaaacct
gatagtaggttccaggcgaaccaaacaactgatggcaaaacgaaccactgcattgtgaag
gaggcttcaagtcagtcaaccaaagtggttgatggcatgcagattgatggagaggaagat
ggtgctgataaattagttgaagaacatccttcgaagcgtcgacgcttatgttcttcaata
gatgccactggttcattaatggagcagttagcactgctgactacagcagtgagcccagat
gttgttgcagcagcagctgctgcatcaattaaagcattgggggatgaaaacccccaagca
aagaaagcttttcatctcagcgagaaagaataccaaggcaaatcattcccttctaaccgt
gtccaagagagtaattgcaatgttggcgatcaggaagtggaaatgcatggaaaaactgtt
tctgataagaaaatggaaaagaagttcatttctacagcatatcaagtaagggcagctgtt
ggaacagctgttggtgtagctgctgcccgtgctaagatgcttgcggaccaggaagagcga
gagatggagcttttaatggcgtccataattgaaactcagctaagaaagatccagtacaag
atcaaacactttgaggagctagaactgatcatggatcaggagtacaccacaatacaggaa
ataaaggaatccctcatcaaggattggctaaaggtcctcaagcgagcatttgagactgga
gcgcctatccagagggatgaagtgctcacaaagctgttccttagcaagtctgctccatag
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