Lolium rigidum (rigid ryegrass): 124672162
Help
Entry
124672162 CDS
T09103
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124672162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124672162
03009 Ribosome biogenesis [BR:
lrd03009
]
124672162
04131 Membrane trafficking [BR:
lrd04131
]
124672162
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124672162
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124672162
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124672162
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124672162
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124672162
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124672162
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
AAA_2
AAA_5
AAA_14
AAA_33
AAA_22
TIP49
NPHP3_N
AAA_17
CDC48_2
RNA_helicase
nSTAND3
Mg_chelatase
AAA_18
AAA_28
Parvo_NS1
ATPase_2
ABC_tran
IstB_IS21
AAA_7
AAA_24
NB-ARC
Viral_helicase1
TsaE
Zeta_toxin
NACHT
ResIII
DUF815
Vps4_C
Motif
Other DBs
NCBI-GeneID:
124672162
NCBI-ProteinID:
XP_047064393
LinkDB
All DBs
Position
7:complement(153712859..153715216)
Genome browser
AA seq
785 aa
AA seq
DB search
MAIASSSKKAANRLVVEEATTDDNSICNLHPATMEDLSIFKGDVVLLKGKRRRTTVCIVV
PDDTCEEHKLKINRVVRSNLRVRIADVVSVHLCPDAKYGTRVHILPVDDTIEGITGNLFE
AYLKPYFADAYRPVHKGDLFLVRGGMRSVEFKVIEIDPPLNYCIMAADTEIFCDGEPVKR
EDEERLDDVGYDDVGGMRKQMDQIRELVELPLRHPQVFKCLGVKPPKGILLYGPPGSGKT
LIARAVANETGAFFFCINGPDIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPK
RDKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP
DEVGRLEVLRIHTKNMKLSEDVNLELVAKDTHGYVGADLAALCTEAALQCIREKMDVIDL
EDDTIDAEILNSMAITNDHLKTALVGTNPSALRETVIEVPNVSWSDVGGLDGVKRELQET
VQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWF
GESEANVREIFDKARQSAPCVLFFDELDSIAMQRGGSVGDAGGAADRVLNQLLTEMDGMN
AKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDVDL
GALARFTAGFSGADITEICQRACKYAIREDIEKDIERQRSGMEVDGEQEDEVAEIKAAHF
EESMKYARRSVSDGNIRKYQSFAQTLQQSRGFGTEFRFPAQAQAAEASPNAFDTSAAANE
DDLYN
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgcctcgtcgtcgaagaaggcagcgaaccggctggtggtggaggaggctacc
acagacgacaactccatctgcaacctccacccggccaccatggaggatctctccatcttc
aagggtgacgtcgtgctgctcaagggcaagcgtcgccgcaccaccgtctgcatcgtcgtc
cccgacgacacctgcgaggagcacaagctcaagatcaacagggtggtccgttccaacctc
agggtgcgcatcgccgacgtcgtgtccgtgcatctctgccccgacgccaagtatggcaca
cgcgtgcacatcctccccgtcgacgacaccatcgagggcatcacgggcaacctattcgag
gcctacctcaagccctacttcgcggatgcctaccgtccggtgcacaagggtgacctcttc
ctcgtgcgtggtggcatgcggagcgtcgagttcaaggtcatcgagatcgaccctccgctc
aactactgcattatggcagcggacacggagatcttctgcgacggcgagccggtgaagagg
gaggacgaggagaggcttgacgacgtcggctatgacgacgtgggcggcatgcgcaagcag
atggaccagatcagggagctggtcgagctgccgctcaggcatccgcaggttttcaagtgc
ctcggcgtgaagcctcccaagggcatcctcttgtacggccctcccggctccggcaagacg
ttgatcgctcgtgccgtggcaaacgagacgggggccttcttcttctgcatcaatggcccc
gatatcatgtccaagatggctggtgagagcgagagcaacttgagaaaggcgtttgaggag
gccgagaagaacgcgccgtccatcatcttcattgatgagatcgactccattgctccaaag
agggacaagacacacggcgaggtggagaggcgcatcgtgtcccagctgctgacgctcatg
gacggcatgaaggcgcgagcgcacgtcatcgtgatgggtgccacgaatcgcccaaacagc
atcgaccctgccctgaggcgcttcggcaggttcgaccgcgagatcgacattggcgtgccg
gacgaggtcgggcgccttgaggttctgcgcatccacaccaaaaatatgaagctctcggag
gacgtcaacctggaactggtggccaaggacacgcacggctatgttggtgccgacttggcc
gcgctctgcaccgaggcggcgctccagtgcatcagggagaagatggatgtgatagacctc
gaggatgacacaatcgacgctgagatcttgaactccatggccatcaccaacgaccacctc
aagacggctctagtcggcacgaatccttcggcgcttcgtgagaccgtcattgaggtaccc
aacgttagctggagcgatgtcggcggcctcgacggcgtcaagagggagctgcaggagact
gtgcagtacccggtagagcaccccgagaagtttgagaagtttggcatgtcgccttccaag
ggcgtcctcttctacgggccaccaggctgcggcaagacattgctggccaaggcgatcgcc
aacgagtgtcaggccaacttcatcagtattaagggccccgagctgctcaccatgtggttt
ggcgagagcgaggccaacgttcgtgagatattcgacaaggctaggcagtcagcgccatgc
gtgctcttcttcgacgagctcgactcgatcgcgatgcagcgcggtggcagcgtgggagac
gccggcggcgcggcggacagggtcctgaaccagctgctgaccgagatggacggcatgaac
gccaagaagacggtgttcatcatcggcgccactaacaggccggacatcatcgactcggcg
ctgcttcgtcccggccgcctcgatcagctcatctacatcccgttgccggacgaggcctcg
cggcaccagatcttcaaggcctgcctcaggaagtctcccgtggccaaggacgtcgacctc
ggcgcgctcgcgaggttcactgcaggtttcagtggcgccgacatcaccgagatttgccag
agggcgtgcaagtatgcaatcagggaagacattgagaaggacatcgagaggcagaggtca
ggcatggaggtggacggcgagcaggaagatgaagtggctgagatcaaggcggctcacttc
gaggagtcgatgaagtacgcgaggaggagcgtcagcgacggcaacatcaggaagtaccag
tcctttgctcaaacgctgcagcagtccaggggcttcggcaccgagttccgcttcccggcg
caggcacaagcggcagaagcttctcccaatgccttcgacacctcggcggcagccaatgag
gatgatctctacaactaa
DBGET
integrated database retrieval system
