Lolium rigidum (rigid ryegrass): 124672372
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Entry
124672372 CDS
T09103
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124672372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124672372
03016 Transfer RNA biogenesis [BR:
lrd03016
]
124672372
Enzymes [BR:
lrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
124672372
Messenger RNA biogenesis [BR:
lrd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
124672372
Transfer RNA biogenesis [BR:
lrd03016
]
Prokaryotic type
tRNA degradation factors
124672372
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Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
Motif
Other DBs
NCBI-GeneID:
124672372
NCBI-ProteinID:
XP_047064566
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All DBs
Position
7:88680166..88691215
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AA seq
893 aa
AA seq
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MLASPATLRHLLLPAPPHLAFALPNPAPPLLHAWLPISRLAPPRVAHASSRRPRRRDGRA
RAVAAAGEEAAAPAEEASSSAPAKFSVKIPVGDRHILVETGQIGRQASASVMVTDGETIV
YCSVCMADTPSDPSDFFPMSVHYQERLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLR
PTMPKGFYYETQILSWVFSYDGIHSPDCVAVTAAGIAMALSEVPNKQTIAGVRIGMINDQ
FVVNPTTEQMEDSELDLMMAGTDSAILMIEGFCDFLTEEKLLQAVETGQEAIREICKAID
VLVKTCGKKKMVEAINLPPPELYRHVEDISGDELVKALQIKQKIPRRKTLSALEEKVITI
LSEQGYVSKDESSGPIENLADIVEEEDEDEIIEDGEVDEGDVHIKPVSRKPHRQLFSEVD
VKLVFKEVSSKYLRRRIVEGGKRSDGRSPCELRPINSQCRLLPRAHGSALFTRGETQALA
VVTLGDYQMAQRIDTLVDTEESKSFYLQYTFPPSSVGEVGRTGAPNRREIGHGMLAERAL
EPILPSEKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLD
TQEFGGDGTPLILSDITGSEDASGDMDFKVAGNEHGISAFQMDIKVVGITLPVMEQALRQ
ARDGRKHILNEMSKCSPPPAKALSPYAPVIHIMKVKPNKVSLIIGSGGRTIKSIIEETGV
YGIDARDDGTVKITARDIESLEKSKTIIANLTMVPKVGEIFRNCEIKTIAPYGAFVEIAP
GREGLCHISELSSSWLAKAEDAYKVGDRIDVKLIEINDKGQLRLSCKALLPDANQEPGSN
KPQTSGPTKEKIVYKDDIIKVTTRRSRRKKEGEPSAAENATSKTLENSTAENA
NT seq
2682 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgagccccgccacgctccgccacctcctcctccctgcgccgccgcacctcgcc
ttcgctctcccgaaccccgcgccgccgctcctccacgcgtggctccccatctcccgcctc
gcgccgccgcgcgtcgcgcatgcctcctcgcgccgaccgcggcggagggatggcagggct
agggctgtcgctgctgcaggagaggaggcggcggcgcccgcggaggaggcgagcagctcc
gccccggccaagttctccgtgaagattcccgtcggcgaccgccacatattggtagagacg
ggccagattgggaggcaagcgagtgcgtctgtaatggtcactgatggagaaacaattgtc
tactgttctgtttgtatggctgatactccaagcgacccttctgattttttcccaatgtca
gttcactatcaggagcgcctttcagctgctggaagaactagtggcggtttctttaaacga
gaaggaagggcaaaagaccacgaggttttagtatgcagattgatagataggcctctacgc
cctactatgcccaaggggttctattacgaaactcagattctatcctgggttttcagttat
gatggtattcattcccctgattgcgtggctgtgacagctgctggtatagccatggcactc
tctgaagttccaaataaacaaacaattgctggcgtaagaatcggtatgatcaacgaccag
tttgtggttaacccaaccactgaacaaatggaggactcggagttggacttgatgatggct
gggaccgatagtgctatattgatgatagagggattctgtgattttctcactgaggagaag
ctgcttcaagccgtggaaacaggacaggaggcaattcgagaaatctgcaaggcaattgat
gttcttgtcaagacctgtgggaagaagaaaatggttgaggctatcaatttaccaccccct
gaactctacaggcatgttgaagatatctctggagacgagttagtgaaggcattgcaaata
aaacaaaaaattcctcgaagaaaaactctttcagcactggaggagaaagtaataactata
ctgtcagaacaaggctatgtgtccaaagatgagtcatctggacccattgaaaatttagct
gatattgttgaggaggaagatgaggacgaaattatagaggatggtgaagtggatgaaggt
gatgttcacatcaagccagtctcaaggaagccccaccgtcagttattctcagaagttgat
gtcaagctagtcttcaaggaagtatcatccaaatatttgcgaaggcggattgtagagggt
ggaaagcgaagtgatggacggagtccttgtgagcttcggcctattaattctcaatgtaga
ttacttccacgggcacatggcagtgcactgttcacaaggggagaaacacaggcactggcc
gtggtcactttaggtgactatcagatggctcaaagaattgatacccttgttgacaccgag
gaatcaaaaagtttctatcttcagtacacattcccgccatcatctgttggtgaagttggt
cgaactggagcacctaataggagagagataggtcatggtatgcttgcagaaagggcgctg
gaaccgattttaccttcagaaaaggattttccgtacaccattcgtgtggagagtactatc
actgaaagtaatggctcatctagcatggcttctgtctgtggaggttgtttagcacttcaa
gatgctggtgttccaataaagttccctgtagctggaatagcaatgggcttggttcttgac
actcaggaattcggtggagacggtacaccacttattctttctgatattactggatctgaa
gatgcctctggtgacatggatttcaaggttgccggtaatgaacatggtatttctgctttc
caaatggacatcaaggtggtgggaataactctacctgtaatggaacaagcacttcgtcaa
gctagagatggtagaaagcatattctaaatgaaatgtcaaaatgttcacccccaccagct
aaagcactgtctccctatgctcccgtaatacatattatgaaggtcaaacctaacaaggtg
agtctaataattggttctggtggaaggacaataaaaagcataattgaggagactggagta
tatggtattgatgcccgagatgatggcacggtaaaaattactgcaagggacatagaaagc
ttagagaagtcaaaaactataatagctaatcttaccatggttccaaaagttggagaaatt
ttcaggaactgtgagatcaaaacaattgctccatacggagcttttgtggaaattgcacct
gggcgtgagggtttatgtcatatcagcgagttaagttcgagttggttggccaaggctgag
gatgcttataaagttggcgatcgtattgatgttaagcttattgagataaatgacaagggt
caacttcgactaagttgcaaagccttgcttcctgatgcaaaccaagaaccaggcagcaac
aagccgcaaacgagtggtccgacgaaagaaaagatagtgtacaaagatgatatcattaag
gtgaccacaagaagatccagacgcaagaaagaaggtgagccgtctgcagctgaaaatgcc
acatcaaagacccttgaaaacagcacagccgaaaatgcctaa
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