Lolium rigidum (rigid ryegrass): 124672524
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Entry
124672524 CDS
T09103
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124672524
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124672524
03009 Ribosome biogenesis [BR:
lrd03009
]
124672524
04131 Membrane trafficking [BR:
lrd04131
]
124672524
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124672524
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124672524
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124672524
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124672524
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124672524
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124672524
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_5
AAA_33
AAA_14
AAA_22
TIP49
NPHP3_N
CDC48_2
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
Parvo_NS1
ABC_tran
AAA_18
ATPase_2
IstB_IS21
AAA_7
Viral_helicase1
Vps4_C
NB-ARC
AAA_24
TsaE
AAA_lid_PRS2_C
Zeta_toxin
NACHT
DUF815
ResIII
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
124672524
NCBI-ProteinID:
XP_047064697
LinkDB
All DBs
Position
7:230074601..230076964
Genome browser
AA seq
787 aa
AA seq
DB search
MSAAPSKKAANRLVVEEPTDDDNSMCKLHPATMERLSIFTGDVVLLKGKRRRSTVCIAIA
DDTCEEHKMMINKVVRSNLRVRVADVVSVHQCHDARHGTRVHVLPVDDTVEGITGNLFES
YLKPYFLDAYRPVRKGDLFLVRGGMRSVEFKVMDIDQGEDLEYCIVAADTEIFCEGEPVK
REDEERLDDVGYDDVGGMRKQMTQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGK
TLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP
NREKTHGEVERRIVSQLLTLMDGMKARAHIIVMGATNRPNSIDPALRRFGRFDREIDIGV
PDEVGRLEVLSIHTKNMKLDVDVNLEVVAKDTHGYVGADLAALCTEAALQCIREKMDVID
LEDDTIDAEILNSMAVTNDHLKTALVGTNPSALRETVVEVPNVSWNDIGGLDGVKRELQE
TVQYPVEHPEKFENFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW
FGESEANVREIFDKARQSAPCVLFFDELDSIAMQRGGSVGDAGGAADRVLNQLLTEMDGM
NAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDVD
LSALARFTAGFSGADITEICQRACKYAIREDIEKDIEKQRLGKDSMEVDCGQEAEEVAEI
KAAHFEESMKYARRSVSDSDIRKYQAFAQTLQQSRGFGTEFRFPAQPQASEAATNTFAAA
DEDDLYN
NT seq
2364 nt
NT seq
+upstream
nt +downstream
nt
atgtcggccgcgccgtcgaagaaggccgcgaaccggctggtggtggaggagccgaccgac
gacgacaactccatgtgcaagctccacccggccaccatggagaggctctcgatattcact
ggcgacgtcgtgctgctcaagggcaagcgccgccgcagcacggtctgcatcgccatcgcc
gacgacacctgcgaggagcataagatgatgatcaacaaggtggtccgctccaacctgcgc
gtccgcgtcgccgacgtcgtgtccgtgcaccagtgccacgacgccaggcacgggacgcgc
gtgcacgtcctgccggtggacgacaccgtcgagggcatcaccggcaacctcttcgaatcg
tacctcaagccctacttcctggacgcataccgcccggtccgcaagggcgacctcttcctc
gtgcgcggcggcatgcggagcgtcgagttcaaggtcatggacatcgatcagggcgaggac
cttgagtactgcattgtggctgccgacacagagatcttctgtgagggagagcccgtgaag
agggaggacgaggagaggctcgacgacgtcggctacgatgacgtaggtggcatgcgcaag
cagatgacgcagatcagggagctggtcgaactgccgctcaggcacccgcagctcttcaag
tccatcggcgtcaagcctcccaagggcatccttctctacggccctccgggatccggtaag
accctcatcgcccgcgccgtggccaacgagaccggggccttcttcttctgcatcaacggc
cccgagatcatgtccaagatggccggagagagcgagagcaacctcaggaaggcctttgag
gaggcggagaagaacgcgccctccatcatcttcattgacgagattgactccatcgctccc
aacagggagaagactcacggcgaggtcgagaggcgcattgtctcccagctgctcaccttg
atggacggcatgaaggcccgcgcccacatcattgttatgggcgccaccaaccggcccaac
agcatcgaccctgctctcaggcgctttggtaggttcgatcgtgagattgacatcggcgta
ccagacgaggtcggacgcctcgaggtcctcagcatccacaccaagaacatgaagcttgat
gtggacgtcaacctcgaggtggttgccaaggatacacacggctacgtcggcgccgactta
gccgcgctctgcacggaggcagccctgcaatgcatcagggagaagatggacgtgatcgac
ctggaggatgacaccatcgatgctgaaatcttgaactccatggccgttaccaatgaccac
cttaagacggctctcgtcggcacgaatccatctgcgcttcgggagaccgttgtcgaggtg
cccaacgtcagttggaatgacatcggcggcctcgacggcgtcaagagggagctgcaagag
accgtccaatacccggtcgagcatccggagaagtttgagaatttcggcatgtcgccttcc
aagggtgtcctcttctacgggccaccggggtgcggcaagaccttgctggccaaggcgatc
gctaatgaatgccaggccaacttcatcagcatcaagggacccgagcttctcacgatgtgg
tttggcgagagcgaggccaacgtgcgtgagatctttgacaaggcgcgtcagtctgcaccg
tgcgtcctgttcttcgacgagctcgattccatcgctatgcagaggggtggcagcgtgggc
gacgccggtggcgcggcggacagggtcctgaaccagctgctgaccgagatggacggcatg
aacgccaagaagacggtgttcatcattggtgccaccaaccggcctgacatcatcgactcg
gcgctgctccggcccggccgcctggaccagctcatctacatcccgttgcccgacgaggcc
tcaaggcaccagatcttcaaggcctgcctcaggaagtctccagtggccaaggacgtcgac
ctcagcgcgctcgcgaggttcacggccggtttcagtggcgccgacatcacggagatctgc
caaagggcatgcaagtacgccatcagggaggatatagagaaggacattgagaaacagagg
ctgggaaaagatagcatggaggtagactgcgggcaggaagcagaggaggtggctgagatc
aaggcggctcacttcgaggagtcgatgaagtacgcgaggaggagcgtgagcgacagcgac
atcaggaagtaccaggcctttgctcagacgctgcagcagtccagagggttcggcaccgag
ttccgcttcccggcgcagccgcaggcgtcagaagctgctaccaacaccttcgcggcagct
gatgaagatgatctgtacaattga
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