KEGG   Lolium rigidum (rigid ryegrass): 124672636
Entry
124672636         CDS       T09103                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124672636
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lrd03041]
    124672636
Spliceosome [BR:lrd03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    124672636
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st Beta-prop_WDR3_2nd WD40_Gbeta WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WD40_MABP1-WDR62_2nd WDR55 Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C DSE1_N Beta-prop_WDR36-Utp21_1st Beta-prop_EML WD40_MABP1-WDR62_1st ANAPC4_WD40 NBCH_WD40 Beta-prop_RIG_2nd Beta-prop_Aladin Beta-prop_WDR75_1st WDR90_beta-prop_4th Beta-prop_EIPR1 CFAP251_N Beta-prop_WDR41 Beta-prop_DCAF4 PAC11 WD40_RFWD3 WD_LRWD1 ASA1 Beta-prop_Nup120_160 Beta-prop_Vps41 eIF2A Beta-prop_WDR19_1st SHKBP1_KCTD3_C Ge1_WD40 Beta-prop_NWD2_C Beta-prop_NOL10_N Beta-prop_SCAP DUF7899 Tricorn_2nd Beta-prop_NUP159_NUP214 Beta-prop_pof12 WD40_like Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 124672636
NCBI-ProteinID: XP_047064790
LinkDB
Position
7:<252171949..252174851
AA seq 257 aa
RATDVAFSPVDNVLATASADKTAKLWNSDGSLLMSFNGHLDRLARLSFHPSGKYLGTASF
DKTWRLWDINTGTELLLQEGHSRSVYGVSFHPDGRSSPMAAAAAASCGLDAHARVWDLRS
GRLYCTLIGHVKPVLGVSFSPNGHLVATASEDNFCRIWDLRTRRMLYSIPAHKSLISHVK
FEPQEGHYLATSSYDTRAALWSTRDYKPIKSLAGHESKVTSLDISGDGQQIVTVSHDRTI
KMWSCRSSIRDNEMELD
NT seq 774 nt   +upstreamnt  +downstreamnt
cgtgcaactgatgttgccttttctccagttgataacgtcttagcgacagcctcagctgat
aaaactgccaaattatggaacagcgatgggtcacttctaatgtctttcaatggtcacctg
gatcgtcttgctcgcctttcttttcatccatcgggaaagtacctgggtacagctagcttt
gacaagacctggagattgtgggacatcaatactggaacagagcttctactccaagaaggg
cacagcagaagtgtatatggagttagctttcacccagatgggcgcagctcaccgatggcg
gcggcagcagcggcatcttgtgggcttgatgcacatgctcgagtttgggatctaagatct
ggaagattatactgtaccctcatagggcatgtgaaacctgttctaggagtaagcttctcc
cctaatggtcatctagttgcaactgcaagtgaagacaatttctgtcgaatatgggatttg
aggactagaaggatgttatattctataccagcacataagagtcttatctcgcatgttaaa
tttgaaccccaggagggtcattatttagcaacatcttcctatgacactagagcagcgcta
tggtcaactcgggactacaaaccaatcaaaagtttggcaggacatgagtcgaaagttact
agtttggatattagtggagatggacaacagattgtgactgtttcacatgatagaacgata
aagatgtggtcgtgcagaagcagcatacgggataatgagatggagttggattaa

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