Lolium rigidum (rigid ryegrass): 124673202
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Entry
124673202 CDS
T09103
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
124673202
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124673202
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
124673202
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
DEAD
DUF7226
Motif
Other DBs
NCBI-GeneID:
124673202
NCBI-ProteinID:
XP_047065278
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All DBs
Position
7:complement(316472302..316482155)
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AA seq
1330 aa
AA seq
DB search
MAKEPRDRPTHPIDETPFEALYDGSWHGVKCIRVRDGGLFVKFVYSGSTVEHNVSGDHLR
MRSRKATCFDCLHVLKPGVSVSVLSPNALQILPCHDDARLVAIKRNHNADQCLCMFGVML
YKNQCPGNTEKGKMITDSKEEVMTLRNIFLLQKLQPKELLEESIQWSCTVDCLSHNRSKL
LSGRFSSEIAHLIVLSTLRGMEFSIKLVEGKIIYRIIKGDKARYSLDSMTVPPGFGNSMD
IISFQPHDETLRPITKNVPLTHPKKDNLTEDTSFVLNTELAIPLEYMRLDGLIDAFCANK
HNPITVKTELDVLSDVFSYEQLDMRRSKRLKTQPERFISYDAPNFDRDKWKRRGASSTKH
DKLQRASYQDLSVKVESSLEEVPVNITPNQAAAGAFVTKEDSSSTKRQRMSTRTPVKEKS
ISEEAKAKSTTQEIASYRYSSVEVDSSCEEVPANITPHQAGACTFLVKEKPSSTKEQYKS
TRRTPVKKNPNSDVVKEKSTIQETALDSPIPRTPVKNKEKNHRPPMSFQRNSFTLSCSLN
GNSEPAFCQKSGRKRKERMSEREYKQMINQCIGNIQSEMERDFEFPLDVPVMNYHQGAYQ
EEDFTWPPSADSPDEKDELDDLDDLWKEMDYSLTTVALLEQNQGPDSEAVHESTAGLGKN
GEIPCHHDCILDEEHGLVCRLCNVVCTEAKDIFPEMVNGNDYNKKRPGCSNFYHDEHVLD
PSLFAILGPELSELRGSVNLWSLIPDLEPKLLPHQRKAFEFIWKNLAGSLQLEEMNNPTA
STGGCVVAHTPGSGKTLLLISFLVSYLKVHPRSRPLVLTPKSAIHTWRREFEKWGISLPL
HVLHHADRSGKPMGDIDPRLQAMLSNFRQSSWKNMRLVDCMDKLCKWHESPSILLMTYSS
FLGMTREDTRMSQRAFMAQVLINNPGLLILDEGHNPRSNKSKLRRVLMKVKTEYRILLSG
TIFQNNFEEYFNTLSLARPRFVNDVMTALVPERKKETSSRRAKHIEAVTRRIFVERVGQK
MESSDNWDRVDGINLLNELTCGFIDSFEGSKLSSLPGIHAYTLFMKPTDIQKEILSKITM
ATSCGGRYLLEVEHLITICSIHPWLMKNTKCASSYFTPAEIDKVDKYKRDLAAGCKAKFV
IDLLHKSSYRGERVLIFCHNVSPINFLVKLIERVFGWRLGEEVLVLQGNQELPVRSDIMD
KFNGDIEGKRKVLIASTTACAEGISLTGASRLVMLDSEWNHSKTRQAIARAFRPGQQRTV
YVYLLVASGTWEEEKYSSNRRKAWVAKMVFHGRYFVDPLQNAVTAIDDSVLKELADEDKT
KTFHKIVKQD
NT seq
3993 nt
NT seq
+upstream
nt +downstream
nt
atggccaaggaacctagagaccgccctacccatccgatcgatgaaactccatttgaggca
ctttatgatggctcatggcatggagttaagtgtataagggtcagggatggcggtctcttc
gttaagttcgtctactctggatccacagtggagcataatgttagcggggatcatctgcgc
atgcgatccagaaaggcgacatgcttcgattgcttgcatgttctcaagccaggtgttagt
gtctctgtactatcacccaatgccctccaaatattaccgtgtcatgatgatgcaaggctc
gtcgcaatcaagagaaatcataatgcagatcagtgtctatgcatgtttggtgttatgctc
tacaagaatcaatgtcctggcaacactgaaaagggaaaaatgataactgatagtaaagag
gaggttatgaccctaagaaatatcttcctcttgcaaaaactccagccgaaggagctcctg
gaggaaagcatacaatggagttgtacggtggactgcctctctcacaatagaagcaagctc
ttaagtggtaggttctcttcagaaattgcacatctcatagtactgtctactctgagggga
atggagttcagcatcaagctggtagagggtaagatcatttatcgtatcatcaaaggagac
aaagcacgatacagtctcgattccatgaccgtccctccaggatttggcaacagcatggat
ataatttcattccaaccgcatgatgagactttacgcccaattaccaaaaatgtccctctc
actcatccaaagaaggacaatctcacagaagacacgagttttgttttgaatactgaattg
gctattccattagaatacatgagattggatggtctaatcgatgctttctgtgcaaacaag
cacaatccaatcactgtgaagactgaattggatgttctatctgatgttttctcgtatgag
caactggacatgaggcgctcaaagcgtctcaaaactcaaccggagcgctttatcagttat
gatgcacctaacttcgatcgtgacaagtggaagaggcgtggtgcatcatccaccaagcat
gataaacttcaaagagcttcatatcaagatttatcagttaaagtagaatcaagcttggaa
gaggtcccagtgaacatcacaccaaaccaagcagctgcaggtgctttcgtgaccaaggaa
gactcaagctccacaaaaaggcagcgtatgagcacaagaactcctgtgaaggaaaaatcc
atctctgaggaagcgaaggcgaagagcacaactcaagaaatagcttcgtatcgatattca
tcagttgaagtagattcaagctgtgaagaggtcccagcaaacatcacaccgcaccaagca
ggtgcatgcacttttctggtcaaggaaaaaccaagctccacaaaagagcagtataagagc
acaaggagaactcctgtgaagaaaaaccccaactctgatgtagttaaggagaagagtaca
attcaagaaacagctttagattctcctattcctcggacacctgtaaagaataaggagaag
aatcatcgcccgcctatgtcatttcaacggaactcatttactttatcatgcagcctaaat
ggcaattctgagccagcattctgtcagaaaagtggtaggaaaagaaaggaacgcatgtct
gaaagagaatacaagcaaatgataaaccaatgcataggaaacatccagagtgaaatggag
agggactttgagttccctcttgatgtccctgtgatgaattaccatcagggtgcttaccaa
gaagaggattttacgtggccaccttctgctgatagtccagatgagaaggatgagcttgat
gatcttgatgatctttggaaagaaatggactactcattgaccacagtagcacttcttgag
caaaatcagggcccagattcagaagcagttcatgagagcactgctggtttaggaaaaaac
ggagaaataccatgtcatcatgactgcatactggatgaggagcatggactggtgtgcaga
ttatgcaatgttgtatgtactgaggcaaaggatatatttccagaaatggtcaatggtaat
gactataataagaagagacctggatgcagtaatttttaccatgatgagcatgtacttgat
ccttctctttttgcaatcctgggaccagagctttcggaattgaggggctctgtgaacttg
tggagtttaatacccgatctcgagcctaaactgcttcctcatcaaaggaaggcgttcgag
tttatttggaaaaacttggcgggatcattgcaacttgaggaaatgaataatccgacagcc
agtacaggtggctgtgtggttgcacatactcctggatccgggaaaacactgctgctgatc
tcatttcttgtcagttacttgaaggttcacccgagaagccggccgttagttcttactcca
aaatctgctatccacacatggaggagagaattcgagaaatggggtatttcacttcctctg
catgtgcttcaccatgctgacagaagtggcaagccaatgggggatattgatcctaggctg
caggcaatgttaagcaattttcgccagtcgtcctggaaaaatatgcgacttgtggattgt
atggacaagttatgcaagtggcacgagagtccaagtattctcctcatgacgtactcgtcg
ttcttagggatgacgagagaagacacaagaatgtcgcagcgagcattcatggcacaagtc
ctgatcaacaaccctgggctgttgatcctcgacgagggacacaaccccaggagcaacaaa
tcgaagttgaggcgggtgcttatgaaggtgaaaactgagtatagaatcctcctgtctggt
acaatcttccagaataattttgaagagtatttcaacaccctatctttggccagacctcgg
tttgtcaatgatgtcatgactgcacttgtcccagaaaggaagaaggaaaccagcagcagg
agagctaaacatatagaagcagtgacaaggcgcatttttgtggaaagagttgggcaaaag
atggagtctagcgacaattgggaccgggtagatggcatcaatttgttaaacgagcttaca
tgtggattcatcgattctttcgaagggtcaaagctaagcagccttccagggatacatgca
tatacccttttcatgaaacccactgacatccaaaaggagatactttcgaaaataacgatg
gctacgtcatgtggtggccgttaccttcttgaggttgagcatctcatcacaatttgctct
atccatccatggcttatgaaaaacaccaaatgtgctagcagttacttcactccagcagaa
atagataaagttgacaagtacaagagggacttggcagctggttgcaaggccaagtttgtc
atcgatctgctgcacaagtcctcctacaggggggagagggtgctgatattctgccacaat
gtgtccccgataaacttcttggtcaagttgatcgagcgtgtcttcggatggcgcctcggg
gaggaagtcctcgtgcttcaaggtaaccaggagcttcctgtccgttccgacatcatggat
aaattcaatggtgacattgaaggaaagaggaaggtgcttattgcttcgacaacagcctgt
gccgagggtatcagcttgacaggtgcatcaaggttggtcatgctggattcagagtggaac
cactccaagaccaggcaggcgatagcgcgggcgttcaggcctggccagcagagaaccgtg
tatgtctaccttctcgtggcatctggtacatgggaggaggagaagtacagcagcaaccgg
agaaaagcttgggtagcgaaaatggtcttccatggacgctatttcgttgatccgttgcag
aacgccgtgactgctattgatgacagtgttctcaaggaacttgcggatgaagacaagacc
aaaactttccataagatagttaagcaggactga
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