Lolium rigidum (rigid ryegrass): 124673889
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Entry
124673889 CDS
T09103
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124673889
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124673889
03041 Spliceosome [BR:
lrd03041
]
124673889
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124673889
Spliceosome [BR:
lrd03041
]
Complex B
Other components
Prp19-related factors
124673889
Complex C
124673889
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Mad3_BUB1_I
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
HTH_psq
TPR_5
DUF4611
Motif
Other DBs
NCBI-GeneID:
124673889
NCBI-ProteinID:
XP_047065892
LinkDB
All DBs
Position
7:complement(283344017..283348490)
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AA seq
933 aa
AA seq
DB search
MPSAAAGPAAVAPPPPKPSAPAALPFAGISPDLYPTEDDLPYEEEILREPFKLKGWWRYL
VARATSPFPKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPITHPAYSSLNNTFERA
LATMHKMPRVWALYLASLLDQRLLTRGRRAFDRALRALPVTQHDRIWPLYLRLASLHACP
VETSFRVFRRYLQFDPSHAEDFIEFLVSSNRWQEAADRLASVLNDDGFRSVKGKTRHQLW
LELCDILTKHADEVAGLKGDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEE
GVASVMTVQEFSVVFEAYTQFEQSMLAAKLEAAEEDDGGEGSDEDDRKSGMDKLSKKFLA
GCWLTDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKEPARQVAT
YVEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKKATQVNYKVADHLATVWC
EWAEMELRNQNFDKAIELMRLATAEPSVEVKRRAAAEGDEPVQLRLHKSLKLWSFYVDLE
ESLGSLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVFERGVKIFKYPHVK
DIWVTYLTKFVKRYQRSKLERARELFTEAVQKAPPDEKKALYLQYAKLEEDYGLAKRAMN
VYDEAVRAVPNGQKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVMTMCMKFAE
LERNLGEIDRSRAIYIHASNYADPNSHPEFWKKWNDFEIQHGNEDTFREMLRIKRTVAAS
RSQTHFILPEYLMQRDQRLTMDEAVDTLTRAGVPQDEMAALERQLVSEPSSAPAAAPSTS
TTPANRMMNFVSAGAEVRAESSTEQAAANNEDIELPDEESDEEADVQIEERSVPAAVFGE
LGKRAAENREESSSAQENEQQLGALERIKRRRQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggcggccgcgggcccggcggcggtggctcctccgccgccgaagccctccgcc
cccgccgccctcccgttcgccgggatctccccggacctctacccgacggaggacgacctg
ccctacgaggaggagatcctgcgggagccgttcaagctcaaggggtggtggcgctacctg
gtcgcccgcgccacctcccccttccccaagcgcgccgtcatctacgagcgcgcgctcaag
gcgctcccgggcagctacaagctctggcacgcctacctccgcgagcgcctcgaccacgcg
cgcccccaccccatcacccacccggcctactcctccctcaacaacaccttcgagcgcgcg
ctcgccaccatgcacaagatgccgcgcgtctgggcgctctacctcgcctcgctgctcgac
cagcgcctgctcacgcgcggccgccgcgccttcgaccgcgcgctccgcgcgctgcccgtc
acgcagcacgaccgcatctggccgctctacctgcggctcgcgtcgctgcacgcctgcccc
gtcgagacctccttccgcgtcttccgccgctacctccagttcgacccctcccacgccgag
gacttcatcgagttcctcgtctcatctaaccgctggcaggaggccgccgaccgcctcgcg
tccgtgctcaacgacgacggcttccgctccgtcaagggcaagaccaggcaccagctctgg
ctcgagctctgcgacatcctcaccaagcacgccgacgaggtggccgggctcaagggggac
gccattctgcggggcgggatacgcaagttcaccgacgaggtcggcaagctgtggacctcg
ctcgccgattactacgtcaggaggaccctctatgagaaggcgagggacgtgttcgaggaa
ggggttgcttcggtcatgacagtgcaggagttcagtgtggtgtttgaggcatatacgcag
tttgagcagagtatgctggccgcaaagctggaggcagctgaagaggacgacgggggtgag
gggagcgacgaggatgacaggaagagtgggatggacaagctatccaagaaattccttgct
gggtgctggttgactgatgaagatgatactgatttgaggctcgcaaggtttgagcggcta
ttggatcgcagaccagagctccttagcagtgttctgttgagacagaatccacataatgtg
gaggagtggcacaggagggtaaaacttttcgagaaggagcctgcaaggcaagtagcgaca
tatgttgaggctgtgaaaactgtggacccaatgaaggcagtcgggaaacctcatactcta
tgggtggcatttgcaaagatgtatgagaaacataaccgtttagatagtgctgaagatatc
tttaaaaaggctacacaagtgaactataaggtagcggaccacttggctacagtttggtgt
gaatgggcggagatggaactgcgcaaccaaaactttgacaaggcgattgagctgatgagg
ttagcaacagcagagccctctgttgaggtgaagaggcgagctgctgctgagggagatgag
ccggtccagctgagattacataaatctctgaaactatggagtttctatgttgatctggag
gagagccttggatcgctggaaacaacccgtgctgtttacgagagaatattagatttaaga
attgccactcctcaaataattcttaattatgcgtttcttcttgaggagaacaagtatttc
gaagatgcattcaaagtgtttgaaagaggtgtaaaaatattcaagtatcctcatgttaag
gatatttgggttacctacctcacgaagtttgtaaagaggtaccagcgaagcaagctagag
cgggcaagagagctgttcactgaagctgtccaaaaggctccaccggatgaaaagaaggcc
ttatatttgcaatatgctaaactggaggaagactatggactcgcaaaacgtgcaatgaat
gtatacgatgaagctgtaagagctgttcctaacggtcaaaagatgagtatgtatgaaata
tacatagcacgtgctgctgaacttttcggtgttccaaggaccagacaaatatatgagcaa
gctatagaatctggtctcccagatagagatgttatgacaatgtgcatgaagtttgcggaa
cttgaaagaaatcttggagaaatcgaccgttcgcgtgctatttatatccatgcctccaac
tatgccgatccaaactctcatccagagttttggaaaaagtggaatgacttcgagatccaa
cacggtaatgaagatacgttcagggagatgcttcgcatcaagcgtacagtggccgctagc
cgcagtcagactcatttcatccttcctgagtacttgatgcaaagggaccagaggctaacc
atggatgaggcggtggacactctgacacgtgctggtgttcctcaggatgagatggcggcc
ctagaaaggcaactagtttctgaaccatcctcggcgccagctgcagctccaagcaccagt
acgactcccgctaacagaatgatgaactttgttagtgctggagcagaggtgcgggctgag
agcagcacagaacaggctgctgctaacaatgaggacatcgagctgcctgatgaagagagt
gatgaggaggcggatgtccaaatcgaagagaggagtgttcctgctgctgtgtttggagag
cttggcaagagagctgcagagaacagggaggaaagctcttctgctcaagagaacgagcag
cagctgggcgctctcgagagaattaagcgaaggcgtcaatag
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