Lolium rigidum (rigid ryegrass): 124674098
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Entry
124674098 CDS
T09103
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03022
Basal transcription factors
lrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
124674098
09124 Replication and repair
03420 Nucleotide excision repair
124674098
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124674098
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124674098
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
124674098
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
124674098
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
EAD1
Motif
Other DBs
NCBI-GeneID:
124674098
NCBI-ProteinID:
XP_047066086
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Position
7:27470811..27474866
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AA seq
451 aa
AA seq
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MPQVMVVARNFMDMVAALPASKLDMLYDSAFICEAVLRSFPPLAKKYVIQMLYVSAPVPA
AAIEEWVLDEYASKHKVAIDRLVQLRVFVEVRDRRKEVSYRMNNKFQANMQKYLVSGGSL
PREPVPSSITSRLPTVTELENYALEQWECFLLQLINSSQVEKGTSFSSSMMRTFQRGLLS
SRDNEAPKLSENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHTLGD
AYSLNTLTDVQRIAIRDLAELGLVKLQQGRKDSWFIPTKLATNLSSSLSDSSASKEGIVV
VETNFRLYAYSASRLHCEILRLFSRVEYQLPNLIVGAITKESLYGAFDNGITAEQIIAFL
QQNAHPRVIDKIPIVPENVTDQIRLWENDRNRVEMVLSHAYEDFPSKDMFEQCCDYARDN
GFLLWEDAKKMRLIVRGEFHEEMRVFLRRQR
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgatggtcgtggcgcggaacttcatggacatggtggctgcgctgcctgcc
tccaaactcgacatgctctatgattccgcattcatctgcgaggccgtgctcaggtcgttc
ccgccgctggcaaagaagtacgtaattcagatgttgtacgtgtcggcaccagtacccgct
gcagctatcgaggagtgggtgctggatgagtatgcctccaagcacaaggttgccatcgat
aggctggtccaacttagggtctttgtcgaagtacgtgatagaagaaaggaggtgagctac
aggatgaacaataagttccaggcaaacatgcagaagtatttggtcagcggtggaagttta
ccaagggaaccggtaccatcgagtattacttccagattgcctacagtaacagaactagaa
aactatgctcttgagcaatgggagtgttttttgctgcaattgatcaactcatcccaagtt
gagaaagggacaagtttcagctcgtctatgatgagaacgttccagagaggtcttctgagt
tcaagggataatgaagctcccaagttatctgagaatggcttccagtttctgctaatggag
acaaatgcacaactttggtacataatgcgggaatacatttcatcagcagaggaacgtggt
gtggaccccacagagttgatatcgtttctcttggaacttagtttccatactctgggagat
gcttatagcttgaatactctgaccgatgtccaaagaattgccattagggatctggcggag
cttgggctagtcaaattgcagcagggtcgaaaagatagctggttcatacctacaaaattg
gctacaaacctttcatcgagcttgtcggattcatctgccagcaaagagggcattgtggtg
gtggagacaaacttcaggctgtatgcctactctgcttccagattgcactgtgaaattcta
cggcttttttcgagggtggagtatcaacttccgaacctcatcgtgggagctattacaaaa
gaaagtctttatggtgcttttgacaacgggatcactgctgaacagataatcgcgttcctt
cagcaaaatgcccaccctcgtgttatcgacaagatacctatagtcccagagaatgtcaca
gatcagatcaggttatgggagaacgaccgtaacagggtcgagatggtcctgtcacatgcg
tatgaagatttcccgagcaaggacatgtttgagcagtgctgtgactatgcgagggataac
gggttcttgctgtgggaggacgcgaagaagatgaggctgatagtgcgaggagagtttcac
gaagagatgcgggtgttccttcgtaggcagagatga
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