Lolium rigidum (rigid ryegrass): 124674493
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Entry
124674493 CDS
T09103
Name
(RefSeq) transducin beta-like protein 3
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
124674493
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
lrd03009
]
124674493
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
124674493
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
Utp13
Beta-prop_EML_2
EIF3I
Beta-prop_EML
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
NBCH_WD40
Beta-prop_SPT8
Beta-prop_IFT140_1st
ANAPC4_WD40
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_DCAF12
Beta-prop_NWD2_C
Beta-prop_WDR19_1st
Beta-prop_IP5PC_F
WD_LRWD1
Ge1_WD40
WDR54
Beta-prop_NUP159_NUP214
Beta-prop_WDR75_2nd
WD40_like
Cytochrom_D1
UTP15_C
Polysacc_lyase-like
Motif
Other DBs
NCBI-GeneID:
124674493
NCBI-ProteinID:
XP_047066493
LinkDB
All DBs
Position
7:59185258..59192130
Genome browser
AA seq
926 aa
AA seq
DB search
MALSLGPKKNYRCDRSLQQFYTGGPFAVGTGADADAEAFLACACGSDLRVVSAADASAIG
DPIDGDSEAVTALALSPDSRLLFAAGHSRLIRVWDLASRTCIRSWKGHDGPVMAMACHAS
GGLLATAGADKKVCVWDVDGGFCTHFFRGHTGVVTTIMFHKDPKRLLLFSGSDDGDVRVW
SLESKKCIAVLKAHLSTVTSLALSEDGQTLLSAGRDKVVTVWDLRKYSSKKTITAYEMIE
GVSFIGPGSGFLACLGVEPANLKEKANGYCLTVGERGVVRIWCLESAVCVFEQKSSDVTI
NSENEESRRGFTATVMLPDDQGLLCVTADQEFLFYSCTRTDEGTFQLNLYKRLIGYNDEI
LDLKFVGEEEQYLAVATNLEQVRVYDVASMSCSYVLAGHTEIVVCLDTCVSASGKKLVVT
GSKDNTVKLWDMEKRSCIGTGKGHLGAIGCVAFSKKSKNFFVSGSSDRTIKVWTWDDALI
DANGEVPLKAKAGVAAHDKDINSLSISPDDGLVCSGSEDRTACIWKLPNLVSSVVLKGHK
RGIWSVEFSPVERCVITSSGDRTIKIWHVPDGSCLKTFEGHTSSVLRASFLSRGTQFVSC
GSDGLVKLWTIKTNECIATYDKHDGKVWALAIGRKTEMLATGGTDSDLNLWHDCTLEDKQ
EDFLKKEEEVLRGQELENAVSDSDYTKAIQLAFELRRPRRLLELFSQLCRKADPEDPIEK
ALHGLPKEGLRVLLEYIREWNTKPKFCHVAQFVLFRVLRSFPPTDIVEIKGISELLEGLI
PYSQRHFSRVDRLVRSTFLLDYTLTRMSVVDPDVVDAGTTRDVTNDLSVENGKILPEEPA
QESPEKPGKKRKSSKKGSNVVSVDIDVVDVGTARDVTNDSSVGNREILPEEPAQESPEKP
GKKRKSSKKGSKKVKTSSSNVVSVEA
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggctctgtcgctggggcccaagaagaactaccgctgcgaccgctcgctgcagcagttc
tacaccggcgggcccttcgccgtcgggaccggcgccgacgccgacgccgaggccttcctc
gcgtgcgcctgcggcagcgacctgcgcgtggtgtccgccgccgacgcctccgccataggg
gaccccatcgacggcgactccgaggccgtcacggcgctcgccctctcccccgactcccgc
ctcctcttcgccgccgggcacagcaggctcattagggtctgggacctcgcgtcacgcact
tgcatccgcagttggaaggggcatgatggtcctgttatggccatggcatgccatgcttct
ggtgggctgcttgcgaccgccggagcagacaagaaggtgtgcgtgtgggatgtagatggt
ggattctgcacgcatttttttagaggccacacaggggttgtgacaaccataatgttccat
aaagatccaaagcgccttctgttattttcaggaagtgacgacggcgatgtgcgagtttgg
agccttgaaagcaaaaaatgcattgctgtgcttaaggcgcatttgtcaacagtgacttcg
ttggcattatcagaagatggccaaacattgctcagtgcagggagggataaggttgtgact
gtgtgggatcttcggaagtatagctcaaagaagacaataacggcttatgaaatgatagaa
ggtgtttccttcattggaccaggaagtggcttcctggcttgtctgggcgttgaaccggca
aatttgaaggaaaaagcaaatggttattgtcttacagttggtgaacgtggagttgtgcgc
atatggtgcttggaaagtgctgtgtgtgtatttgagcagaagtcatccgatgtaaccatc
aactcagagaatgaggaatcaagaagaggctttacagctactgttatgctgccagatgac
caaggattgctatgtgtcactgctgatcaagaatttttgttctattcttgtacaagaact
gatgaaggaaccttccagttgaacctatataaacgtctaataggttataacgacgagatt
cttgatttgaagtttgttggggaagaggaacagtaccttgctgtagccactaacttagag
caggtccgtgtttatgatgttgcatcaatgtcatgttcttatgtgctggctggccacact
gaaattgttgtttgccttgacacctgtgtctctgcttctgggaagaaacttgttgtaact
ggaagcaaagataatactgtaaagttgtgggatatggaaaagagaagctgcattggtacc
ggcaaaggccatctaggagctattggttgtgttgctttctcaaagaaatcgaagaacttt
tttgttagtggcagcagcgaccgaaccatcaaggtttggacttgggatgatgcgctgatt
gatgccaacggtgaagttcctctcaaagcaaaggctggtgtagctgcacatgataaagat
attaattctctgtccatctcacctgatgatggccttgtttgcagtggttctgaggaccga
acggcatgcatttggaaactcccaaacctagtgtcctctgttgtccttaaagggcataaa
aggggcatttggtcagttgagttttctcctgttgaacgatgtgtcataacatcatccggt
gacagaacaatcaaaatatggcatgttcctgacggctcatgcttgaagacatttgagggt
catacatcaagtgttttgagagcatcattcctttcacgtggaactcagtttgtttcttgt
ggaagtgatggtttagtgaagctatggacaataaaaacaaatgaatgcattgctacttat
gacaagcatgatgggaaggtttgggcattggctattggtaggaaaactgaaatgcttgct
actggtggaactgattcagaccttaacctttggcacgattgcacgttggaagataagcag
gaagatttccttaaaaaggaggaggaagtcttaagaggccaagaattggaaaatgcagta
tcagattctgactacacaaaagcaatacaactcgcatttgagcttagaagaccgcgcagg
cttcttgagttattctcacagctctgcaggaaagctgatccagaggaccctatagaaaaa
gcccttcatggtctcccaaaggaagggcttcgcgtgcttctcgagtatatacgtgaatgg
aatacaaagcccaagttttgtcatgttgcacagtttgtgctttttcgggtgttgaggagc
tttcctcccactgacatcgtggagataaaaggcatcagtgagctactcgagggcctcatt
ccatactcgcaaaggcacttcagcagagttgataggctagtacgcagcacatttttgttg
gactacaccttgacccggatgtctgtcgttgacccagatgtagtagatgcgggcacaacc
agagatgttacaaacgatttatcagtggagaatggtaaaatcctgccggaagagcctgca
caagagagccctgaaaagccgggcaagaaaagaaaatcaagcaagaaaggtagcaacgtt
gtttctgtcgacattgatgtagtagatgtgggcacagctagagatgttacaaacgattca
tcagtggggaaccgtgaaatcctgccggaagagcctgcacaagagagccctgaaaagccg
ggcaagaaaagaaaatcaagcaagaaaggtagtaagaaggtgaagacttcttccagtaac
gttgtttctgtcgaggcttaa
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