Lolium rigidum (rigid ryegrass): 124674602
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Entry
124674602 CDS
T09103
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124674602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124674602
03041 Spliceosome [BR:
lrd03041
]
124674602
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124674602
Spliceosome [BR:
lrd03041
]
Complex B
Other components
Prp19-related factors
124674602
Complex C
124674602
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Mad3_BUB1_I
TPR_19
TPR_15
ARM_TT21
ARM_TT21_C
TPR_16
HTH_psq
TPR_5
DUF4611
Motif
Other DBs
NCBI-GeneID:
124674602
NCBI-ProteinID:
XP_047066600
LinkDB
All DBs
Position
7:337156567..337161102
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AA seq
933 aa
AA seq
DB search
MPSAAAGPAAVAPPTAKPSAPAALPFAGISPDLYPTEDDLPYEEEILREPFKLKGWWRYL
VARAAAPFPKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPISHPAYSSLNNTFERA
LATMHKMPRVWALYLASLLDQRLLTRGRRAFDRALRALPVTQHDRIWPLYLRLASLHACP
VETSFRVFRRYLQFDPSHAEDFIEFLVSSNRWQEAADRLASVLNDDGFRSVKGKTRHQLW
LELCDILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEE
GVASVMTVQEFSVVFEAYTQFEQSMLAAKLEAAEEDGGEGSDDEDDRKSGMDKLSKKFLA
GCWLTDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKEPARQVAT
YVEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKKATQVNYKVADHLATVWC
EWAEMELRNQNFDKAIELMRLATAEPSVEVKRRAAAEGDEPVQLRLHKSLKLWSFYVDLE
ESLGSLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVFERGVKIFKYPHVK
DIWVTYLTKFVKRYQRSKLERARELFTEAVQKAPPDEKKALYLQYAKLEEDYGLAKRAMN
VYDEAVRAVPNGQKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVMTMCMKFAE
LERNLGEIDRSRAIYIHASNYADPNSHPEFWKKWNDFEIQHGNEDTFREMLRIKRTVAAS
RSQTHFILPEYLMQRDQRLTMDEAVDTLTRAGVPQDEMAALERQLVSEPSSAPAAAPSTS
TTPANRMMNFVSAGAEVRAESSTEQAAANNEDIELPDEESDEEADVQIEERSVPAAVFGE
LGKRAAENREESSSAQENEQQLGALERIKRRRQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggcggccgcgggcccggcggcggtggctcctccgacagcgaagccctccgcc
cccgccgccctcccgttcgccgggatctcaccggacctctacccgacggaggacgacctg
ccgtacgaggaggagatcctgcgggagccgttcaagctcaaggggtggtggcgctacctg
gtggcccgcgccgccgcgcccttccccaagcgcgccgtcatctacgagcgcgcgctcaag
gcgctgccgggcagctacaagctctggcacgcctacctccgcgagcgcctcgaccacgcg
cgcccgcacccgatctcccacccggcctactcctccctcaacaacaccttcgagcgcgcg
ctcgccaccatgcacaagatgccgcgcgtctgggcgctctacctggcctcgctgctcgac
cagcgcctgctcacgcgcggccgccgcgccttcgaccgcgcgctccgcgcgctccccgtc
acgcagcacgaccgcatctggccgctctacctgcgcctcgcgtccctccacgcctgcccc
gtcgagacctccttccgcgtcttccgccgctacctccagttcgacccctcccacgccgag
gacttcatcgagttcctcgtctcatccaaccgctggcaggaggccgccgaccggctggcc
tccgtgctcaacgacgacggcttccgctccgtcaaggggaagaccaggcaccagctctgg
ctcgagctctgcgacatcctcaccaagcacgccgatgaggtggccgggctcaaggtggac
gccatactgcggggcgggatccgcaagttcaccgacgaggtcggcaagctgtggacctcg
ctcgccgattactatgtcaggaggaccctctatgagaaggcgagagacgtcttcgaggaa
ggggttgcttcggtgatgacggtgcaggagttcagtgtggtgtttgaggcgtatacgcag
tttgagcagagtatgcttgccgcaaagctggaggcagcggaagaggacgggggcgagggg
agcgatgacgaggatgacaggaagagtgggatggacaagctatccaagaaattccttgct
gggtgctggttgactgatgaagatgatactgatttgaggctggcaaggtttgagcggcta
ttggatcgccggccagagctccttagcagtgttctgctgagacagaatccacataatgtg
gaggagtggcacaggagggtaaaacttttcgagaaggagcctgcaaggcaagtagcgaca
tatgttgaggctgtgaaaactgtggacccaatgaaggcagtcgggaaacctcatactcta
tgggtggcatttgcaaagatgtatgagaaacataaccgtttagatagcgctgaagatatc
tttaaaaaggctacacaagtgaactataaggtagcggaccacttggctacagtttggtgt
gaatgggcggagatggaactgcgcaaccaaaactttgacaaggcgattgagctgatgagg
ttagcaacagcagagccctctgtcgaggtgaagaggcgagctgctgctgagggagatgag
ccggtccagctgagattacataaatctctcaaactatggagtttctatgttgatctggag
gagagccttggatcgctggaaacaacccgtgctgtttacgagagaatattagatttaaga
attgccactcctcaaataattcttaattatgcgtttcttcttgaggagaacaagtatttc
gaagatgcattcaaagtgtttgaaagaggtgtaaaaatattcaagtatcctcatgttaag
gacatttgggttacctacctcacaaagtttgtaaagaggtaccagcgaagcaagctagag
cgggcaagagagctgtttactgaagctgtccaaaaggctccaccggatgaaaagaaggcc
ttatatttgcaatatgctaaactggaggaagactatggcctcgcaaaacgtgcaatgaat
gtatatgatgaagctgtaagagctgttcctaacggtcaaaagatgagtatgtatgaaata
tacatagcacgtgctgccgaacttttcggtgttccaaggaccagacaaatatatgagcaa
gctatagaatctggtctcccagatagagatgttatgacaatgtgcatgaagtttgcggaa
cttgaaagaaatcttggagaaattgaccgttcgcgtgctatttatatccatgcctccaac
tatgccgatccaaactctcatccagagttttggaaaaagtggaacgacttcgagatccaa
cacggtaatgaagatacgttcagggagatgcttcgcatcaagcgtacagtggccgcaagc
cgcagtcagactcatttcatccttcctgagtacttgatgcaaagggaccagaggctaacc
atggatgaagcagtggacactctgacacgtgctggtgttcctcaggatgagatggcggcc
ctagaaaggcaactagtttctgaaccatcctcggcgccagctgcagctccaagcaccagt
acgactcctgctaacagaatgatgaactttgttagtgctggagcagaggtgcgggctgag
agcagcacagaacaggctgctgccaacaacgaggacatcgagctgcctgatgaagagagt
gacgaggaggcggatgtccaaatcgaagagaggagtgttcctgctgctgtgtttggagag
cttggcaagagagctgcagagaacagggaggaaagctcttctgctcaagagaacgagcag
cagctgggcgctcttgagagaattaagcgaaggcgtcaatag
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