Lolium rigidum (rigid ryegrass): 124674800
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Entry
124674800 CDS
T09103
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124674800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124674800
03009 Ribosome biogenesis [BR:
lrd03009
]
124674800
04131 Membrane trafficking [BR:
lrd04131
]
124674800
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124674800
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124674800
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124674800
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124674800
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124674800
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124674800
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_5
AAA_33
CDC48_2
AAA_22
AAA_14
TIP49
NPHP3_N
RNA_helicase
nSTAND3
Mg_chelatase
AAA_28
AAA_17
Parvo_NS1
AAA_18
ATPase_2
ABC_tran
IstB_IS21
AAA_7
Viral_helicase1
NB-ARC
NACHT
AAA_24
TsaE
Vps4_C
Zeta_toxin
DUF815
ResIII
UFD1_N2
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
124674800
NCBI-ProteinID:
XP_047066812
LinkDB
All DBs
Position
7:complement(150791792..150794140)
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AA seq
782 aa
AA seq
DB search
MASAPPSKKAANRLVVEEATHDDNSMCSLHPATMERLCIFRGDLVLLKGKRRRSTLCIAF
TDDTCEEHKMKINKVVRSNLRVRIADVVSVHLCHDAKYGRRVHILPVDDTIEGVTGNLFD
SYLKPYFVDAYRPLRKGDLFLVRGGMRSVEFKVMKIDPADEYCIVAADTEIFCDGEPVKR
EDEERLDDVGYDDVGGMRKQLTQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKT
LIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPN
REKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREIDIGVP
DEVGRLEVLRVHTKNMKLDVGVNLEVVAKDTHGYVGADLAALCTEAALQCIREKMDVIDL
EDDTIDAEILNSMAVTNDHLKTARIGTNPSALRETVVEVPNVSWNDIGGLDGVKRELQET
VQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFIGIKGPELLTMWF
GESEANVREIFDKARQSAPCVLFFDELDSIATQRGGRVGDAGGAADRVLNQLLTEMDGMN
AKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDVDL
GALARFTAGFSGADITEICQRACKYAIREDIEKDMERQRLEKDSMEVEAEEVAEIKAAHF
EESMKFARRSVSDGDIRKYQAFAYTLQQSRGFGTEFRFPTQPQAAEAAADISAAADEDDL
YN
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgcgccgccgtcgaagaaggccgcgaaccggctggtggtggaggaggcgacc
cacgatgacaactccatgtgcagcctccacccggccaccatggagaggctctgcatattc
cgcggcgacttggtgctgctcaagggcaagcgccgccgcagcacgctctgcatcgccttc
accgacgacacctgcgaggagcacaagatgaagatcaacaaggtggttcgatccaacctg
cgcgtccgcatcgccgacgtcgtgtccgtgcacctgtgccacgacgccaagtacgggagg
cgggtgcacatcctcccggtggacgacaccatcgagggcgtcaccggcaacctgttcgac
tcctatctcaagccctactttgtggacgcataccgcccgctccgcaagggcgacctcttc
ctagtgcgtggcggcatgcggagcgtcgagttcaaggtcatgaagatcgatccggccgac
gagtactgcattgtggcggctgacacggagatcttctgcgacggcgagcccgtcaagagg
gaggacgaggagaggctcgatgacgtcggctatgatgacgtgggcggcatgcgcaagcag
ctcacgcaaatcagggagctggttgagctgccactcagacacccgcagctcttcaagtcc
atcggcgtcaagccgcccaagggcatcctcctgtacggccctcctggctctggcaagacg
ctcatcgcccgcgccgtggccaacgagactggggccttcttcttctgcatcaacggtcca
gagatcatgtctaagatggccggagagagcgagagcaatttgaggaaggccttcgaggaa
gccgagaagaacgcgccctccatcatcttcatcgacgagattgactccatcgctcccaac
agggagaagacccatggcgaggtcgagaggcgcatcgtgtcccagcttctgactttgatg
gacggcatgaaggctcgggcgcacgtcatcgttatgggtgccacgaaccgtcccaacagc
atcgaccctgccctaaggcgctttgggaggtttgatcgtgagatcgacattggagtgccg
gacgaggttgggcgcctcgaagtgctgcgcgtccatacgaagaacatgaagctggacgtg
ggcgtcaacctcgaggtggttgccaaggatacgcatggctacgttggcgctgacttggcc
gcgctctgcacggaggcagcactacaatgcatcagggagaagatggacgtgatcgacctg
gaggacgacaccatcgacgccgagatcttgaactccatggccgtcaccaacgaccacctt
aaaacggcccgcatcggtacgaatccttctgcgcttcgcgagaccgtcgtggaggtgccc
aacgtcagctggaatgacatcggcggcctggacggcgtgaagagagagttgcaagagacc
gtccagtacccggtggagcatccggagaaatttgagaagttcggcatgtcgccctccaag
ggcgtcctcttctacgggccaccgggatgcggcaagaccttgctcgctaaggcaatcgcc
aacgaatgccaggccaactttatcggcatcaagggacccgagctgctcacgatgtggttc
ggcgagagcgaggccaacgtgcgagagatctttgacaaggcgcgccaatctgcaccgtgc
gttctcttcttcgacgagcttgactccatcgcgacgcagaggggcgggagagtgggcgac
gccggcggtgcagcggatagggtcctaaaccagctcctcaccgagatggacggcatgaac
gcgaagaagacggtgttcatcataggcgccaccaacaggccggacatcatcgactcggcg
ctgctccggcccggccgcctagaccagctcatctacatccccttgccggacgaggcctct
cggcaccaaatcttcaaggcctgtctgaggaagtctcccgtggctaaggacgtcgacctc
ggcgcgcttgcgagattcacggcgggcttcagcggcgccgacatcacggagatctgccag
agggcgtgcaagtacgccatcagggaggacatcgaaaaggacatggagaggcagagactg
gaaaaggatagcatggaggtggaagcagaggaggtggctgagatcaaggcggctcacttc
gaggagtcgatgaagttcgcgaggaggagcgttagtgatggcgacatcaggaagtaccaa
gcctttgcttacacgttgcagcagtcgagaggtttcggcacagagttccgtttcccgacg
cagccccaggcggcagaagctgctgccgatatctcagccgcagctgatgaagacgatctt
tacaattga
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