Lolium rigidum (rigid ryegrass): 124674887
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Entry
124674887 CDS
T09103
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124674887
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124674887
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124674887
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124674887
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
124674887
NCBI-ProteinID:
XP_047066896
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All DBs
Position
7:complement(118855366..118860003)
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AA seq
726 aa
AA seq
DB search
MQCRRRLAPLLRAPPPRTLLARLLSSSYPSPPPSGGGADGAAASGVAVKQVTRGNLSEAL
EELRARVRDAAFVGLDLEMSGVTSAPWRDTFELDRADVRYLKLRDSAQRFAALQLGICPF
RWDPAKSAFVAHPHNFFIFPRKELPYDSSSHEFLCQTSSIDFLAKYQFDFNTCFHEGISY
LSRAQEEEALEKLNVLHHDAMSASPNTSGEGEDVPLKSTADLLFTERMKIRFSEWRDAIR
SNSTVDNNLLGNSKFGTDQFQTVFFKMRPAVMLNGFTSHQLKLIQQVLRKNFKDLMYVCT
FGEDDTSEKRVVYTDNSDDSMLLMKDVQQDLLTSRKGKVESAIGIRHVIDLLASERKLIV
GHSCFLDIAQVYSKFIGPLPSSMKEFSLGINKVFPHIADTRHLMSANDAVQYLMRQKSKS
LSSAFSFLCPTAAESSTRTPVKIEVEADETTLSCFASGAKHEAGYDAFMTGSVFAQLCAH
LDINFEHLTPKENLARNNRLQKYINHLSPSFNSGTVLDLSTGTERPDTGYKSRYPAAVYE
NVVLIWGFQSELRAKDIKDSICKVFGPASVTTIFSIDRTAVLVQFSKQESVNDFLDLKAT
LERADTAISVLHPLSTILQGGKTRAANYETYRDICNSSVSKYFFADQAEAVCPASNTELK
CENLDAGDALGINDGILDETKNASVQRGEGAKYTSKNRDNSDISCQDILDVLQDGKTLFS
KRINQT
NT seq
2181 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgccgccgccgcctcgccccgctcctccgcgcgccgccgcccaggaccctcctc
gcccgcctcctctcctcatcctacccctcgccgcccccgagcggcggcggagcggatgga
gccgcggccagcggggtggcggtgaagcaggtgacgcgggggaacctgtcggaggcgctg
gaggagctccgcgcgcgggtgcgcgacgccgccttcgtggggctcgacctggagatgagc
ggcgtcaccagcgcgccctggcgggacaccttcgagctcgaccgcgccgacgtccgctac
ctcaagctccgcgactccgcgcagcgcttcgccgccctgcagctcggcatctgccccttc
cgctgggatcccgccaagtccgccttcgtcgcccacccgcataacttctttatctttcct
cgcaaggagctcccatatgatagttcatctcatgaatttctctgccagaccagttcaatt
gacttcctagcgaaataccagtttgatttcaacacgtgcttccacgaaggaatatcttat
ttatccagagcacaagaagaagaggctcttgagaaattaaatgtactgcatcatgatgca
atgtctgcgtctccaaatacttctggagaaggagaagatgtaccattaaagagtactgct
gatcttcttttcacggagagaatgaagatcagattcagcgagtggcgtgatgcgataaga
agcaattcgacagtggataataatttgttaggaaacagtaaatttggcacagaccaattc
cagacagttttcttcaaaatgcgcccagctgttatgcttaatgggttcacatcacatcag
ctaaagttaattcaacaggttttgagaaaaaactttaaagacctcatgtatgtttgtaca
tttggtgaggatgatacatcagagaagagagtagtttatacagacaatagtgatgacagt
atgttattgatgaaagatgtgcagcaagatctactcacaagcagaaaaggaaaagttgaa
tcagcaataggaatccgccatgtcattgatcttcttgcctcagaaagaaaattgattgtt
ggtcacagttgtttcctagatattgcacaagtctacagcaaatttattgggcctcttccc
tcatccatgaaggaattttccttgggcatcaacaaagttttcccacacattgcagatact
agacatcttatgtctgccaacgatgcggtgcagtatttgatgaggcagaaaagcaaatca
ctttcttcagctttctcatttttgtgcccaactgctgcggagtcatctacccgtactcct
gtgaaaattgaagtcgaggcagatgaaacaacgttatcttgctttgcttcgggtgccaag
cacgaggcaggatatgatgcattcatgactggaagtgttttcgcgcagttgtgtgctcat
cttgacatcaattttgaacacctcacgcctaaggagaacctagcgaggaataataggctg
cagaaatacatcaatcatttgtctcctagctttaacagtggaacagtacttgatttaagt
actggcacggagagaccagatacaggttataagagtagatatcctgctgctgtgtatgaa
aatgttgttctcatctggggattccagtctgagctaagagcaaaggatattaaggactcc
atctgcaaagtgtttggtccagcatcagttacgacaatattctcgattgaccgcactgct
gttctcgttcagttcagtaaacaagagtctgtaaatgattttttggatttgaaggctacc
ttagaaagggcagatactgctatttcagtcctgcaccctctgtcaactatattacaagga
ggcaaaacacgagctgcaaactacgaaacctacagggacatttgcaactcatctgtatcg
aagtatttctttgctgatcaagctgaagcagtctgtccagcttcaaacactgagctcaaa
tgtgagaacctagatgctggtgatgcacttggaataaacgatggcattctggatgaaact
aaaaatgcctcggtacagcggggagaaggagcaaagtatacttccaagaaccgagacaat
agtgatatttcgtgccaagatatcttggatgtactacaagatggcaaaacgttattcagt
aaacgaatcaatcagacatga
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