Lolium rigidum (rigid ryegrass): 124674976
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Entry
124674976 CDS
T09103
Name
(RefSeq) sister chromatid cohesion protein SCC2 isoform X1
KO
K06672
cohesin loading factor subunit SCC2
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lrd03036
]
124674976
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
124674976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
Cnd1
HEAT_2
INTS1_R4
IFRD
DUF2654
Motif
Other DBs
NCBI-GeneID:
124674976
NCBI-ProteinID:
XP_047066986
LinkDB
All DBs
Position
7:176418321..176433720
Genome browser
AA seq
1788 aa
AA seq
DB search
MDPPPGAGAGDGRAGFERACRLPNTVHSEIAATLPLPTLPAAPSHDRDEPLAEPDRPDMI
MQAAAIARILANTDISHLGFTVADHAEADPRDCSLLWTEVLKHNPDAFKFKPRAPPPSQG
PLVGQEYLNQGRQKHSEHLAPNLNKARKEHALPPDFINSHREDHRNEVTPDSVASRKPKV
RKKEIDNSASSSGPSIPNSQEVIANFRELVEDFCGKAEIPDNADGDDWLSVPLTDVKVLV
NEITYVRSKQLLHETPMDTLMSLLHVIDRQIRCSQGLSIDVKENADAIDAEHLVFSALES
IHAALAIMTNRDMPKQLYREELIERIIDFSRHQIMDCMAASNPTFRALYKPAGNVTNDDL
GDEDEEDMENGPASKKRRTASNLSARKSSANKVSPSIKSAVQKLCLILGFLKELLITVRL
SDSCILQLVKTCFTTFLVDNMQLLQLKAISVICMVFSSYTQHRSYLVDETLQLVRKLQVS
KNAIRTYHLADEEQKQIQMITALLIHLVQFSANVPDSLKGPVNWSTIIDASVDASYPISC
HEAATEACCLFWTNVLQRFTAAKTQDMSEAKGIIENLVQDLLTVLNLPEYPAAAPILEVL
CVLLLQNAGLKSKDTSARCFAIDLLGGIASRLKRDSVICSKEKLWILQELTDTDNDSSKI
LKNKCCVCLGGRGINMACDTCGRCFHADCMGACSQENLQPDSVCLLCFCKQQLSVLQSYY
ELQNKEKSKRTSTSHKKKSATPDEVTVVDTVQQILLNYLQEAGPQDDGNLFSRWFYLCMW
YKEDQHSQEKIIYYLSRLKSKEILRDSGTGSVLSRDWAKKVCLALGQKNSFSRGFDKILS
LLLASLRENSPVIRAKALRAVSSIVEADPEVLGDKRVQSAVEGRFCDSAISVREAALELV
GRHIASHPDVGLKYIEKVAERIKDTGVSVRKRAIKIIRDLCASNPNADTTNAFVEIISRV
NDDESSVQDLVCKTFYELWFDEPSGSDKHLVADGSSVPMEIAKKTEQIVDMLRKMPSHQP
LVTIIKRSLTLDFLPPSSKATGISSSMMASLRKRCELICKRLLERILQVEEGADNETKIR
TLPYVLVLQAFCIVDPTLCTPVTDPSQFVVTLQPYLKNQADSKSTAQLLESIIFVIDAVI
PLIRKPPQTVVEELEQDLKQMIVRHSFLTVVHACIKCLSALSNAAGRGPRLLEYLVNIFY
KHLSSSSSDSQLLGRSLFCLGLLLRYGYKLLVASENQLDFPKILDLLKRRYLYKEDFSLK
VRALQTLGYILIAKPEFMLQTDILNLIEASLSSGVDYRMKIQGLQNLYEYLRDAESQLTA
DSTGKPNVPYATNGGSEVPVAAGAGDTNICGGIIQLYWNSILERSLDTNDQVRQAALKIV
EIVLRQGLVHPITCVPHLIALETDPVEGNSKLAHHLLMNMNEKYPSFFESRLGDGLQMSF
RFFEAIVSNHNMVATNMKANPIAFVKPGISRIYRLIRANRNSRNKFVHSIVRKFVSDNRS
YPTIGFLVYCVEVLASLPFTSPDEPLYLVYDINRLIQIRAGAIESNLKNWTTMDQQQDVV
GIPRYIGDVMHEPGDTGDVMHEPGDTSDVMHEPVGYSDQNLADIPQTMLNNSCSTSGVDM
VKLQEDCHNAIALQLLLKLKRHLKIVYSLTDARCQAFSLKDQAKSVEVISKQNIPLNINN
TNTSLPSSLQDAARVYQDFKTLLREDSMDYVMYTAETVQKKRPTPRSASKVRRPVAPVAV
RRGRGGRGRGGDDDDDTDDDDWTGGPRVLEFGAQAVTGGRVTRQRVQV
NT seq
5367 nt
NT seq
+upstream
nt +downstream
nt
atggaccctccgcccggcgccggcgccggcgacgggagggccggcttcgagcgcgcctgc
cgcctgcccaacaccgtccattccgagatcgccgccacgctgccgctccccaccctcccc
gccgcgccctcccacgaccgcgacgagcccctcgccgagcccgaccgccccgacatgatc
atgcaggccgccgccatcgcacgcatactcgccaacaccgacatctcacacctgggattc
acggtggcggatcacgccgaggcggatcccagagactgctccttgctctggacggaggtg
ctcaagcacaaccccgacgccttcaagttcaagccccgcgcacctcctccttcgcaaggt
ccccttgttggtcaggaatatctaaatcaaggacgccagaagcattctgagcatcttgca
cctaacctgaacaaagcacggaaggagcatgcacttcctccagatttcatcaattcacac
cgagaggatcatcgtaatgaagtaacaccagattccgttgcttcaaggaaaccaaaagta
aggaagaaggaaatcgataattctgcttcgagttctggcccgagcattcctaatagtcaa
gaagtcattgccaacttccgtgagctggtggaggacttctgtgggaaagcagaaatccct
gataatgcagatggcgatgattggttatcagttccactgactgatgttaaggttcttgta
aatgagattacatatgttcgatcaaagcagctgttgcatgagactcctatggatacactt
atgagtctattgcatgtgatagaccgtcagatccggtgttctcaaggattatcgatagac
gtgaaagaaaatgctgatgccatagatgctgaacacttggttttttctgctctggagtcc
attcatgctgcgttagcaatcatgaccaaccgtgatatgccaaagcagctttatcgagaa
gagcttattgaacgaattattgatttctcaagacatcagataatggattgtatggctgca
agtaacccaaccttccgagctctctacaagccagctggaaatgtcacaaatgatgatcta
ggagatgaagatgaagaagacatggaaaatggaccagctagcaaaaagaggcgtactgcc
tctaatttaagtgcgaggaaatcttctgcaaacaaagtttctccatctataaagtctgct
gtgcagaaactatgcttgatattgggctttcttaaagaactactcataacagtgcggtta
tcagatagttgtatcctgcagttagtaaaaacctgctttactacattcttggtggacaat
atgcagcttttacaattgaaggcgatcagtgttatttgcatggttttttcatcatatacg
caacacaggagttacctggttgatgaaacacttcagctggtccgtaagttgcaggtctcg
aaaaatgctatcagaacttaccatctagctgatgaggaacaaaagcaaatccagatgata
acagccctgctaattcacttggttcagttcagtgcaaatgtgcctgatagcttaaaggga
cctgtaaattggagcacaatcattgatgcctcggttgatgctagttatccaattagctgc
catgaagctgcaacggaggcttgttgccttttctggaccaatgtgcttcaacgttttact
gctgctaaaactcaagatatgtcagaggccaaagggattatagaaaatcttgtgcaggat
ttgctaacagtactaaacttgcctgaatatccagctgctgcccctatactcgaggttctc
tgtgtgttgctgcttcaaaatgctggattgaaatcaaaggacacctctgctcgctgcttt
gctatagatcttcttggtggtattgcatcaagattgaagcgtgattctgttatctgtagc
aaggagaagctttggatattgcaagaacttactgatacagacaatgatagctcaaaaatt
ctgaaaaataaatgttgtgtttgtcttggtggaagaggtataaatatggcatgtgacaca
tgtgggagatgtttccatgcagattgtatgggggcttgtagtcaggaaaacttacagccc
gattctgtctgcctcttatgcttctgcaagcaacagctcagtgtgttacagtcgtactat
gagcttcaaaataaagaaaaaagcaaaagaacatctacctcacataagaaaaaatctgct
acacctgatgaggtgacagtggtggatactgttcaacagatacttttgaattatctccag
gaagctgggccgcaagatgatgggaacctgttttctcgatggttctatctctgcatgtgg
tacaaagaagaccaacattctcaggagaagattatctattatctttccaggttgaaatct
aaggagattctgcgagattctggcactggctcagtactatctagagactgggctaagaaa
gtttgcttggcacttggccagaagaactcattttctcggggattcgataaaattctttcc
ctccttttggctagcttgagagaaaattctccggtaataagagcaaaggccttacgagcg
gtcagcagtattgttgaagctgatcctgaggtattgggtgacaagcgtgtccaatctgct
gttgaaggaaggttttgtgactccgctatttctgttcgtgaagctgcactcgagcttgtt
ggaaggcatattgcttcacaccctgatgtgggcttgaagtatattgaaaaagtcgctgaa
cggataaaggacactggagtaagtgttcgcaaacgtgcaatcaaaattatccgtgatctc
tgtgcttcaaatcccaatgcagatacaactaatgcgtttgtggagattatttcgcgtgtt
aatgatgatgaatcaagtgtacaggatcttgtatgcaaaacattttatgagctatggttt
gatgaaccttctgggagtgataaacacttggttgctgatggtagttcagttcctatggag
atcgcaaaaaagactgagcaaattgttgacatgttgagaaagatgccaagtcatcaaccc
ctcgttaccatcataaaacgcagtttgactcttgatttcctcccaccgtcaagtaaggcc
acgggcattagctcatccatgatggcctcacttcgtaagcgttgtgaattgatatgcaaa
cgcttattagaaaggatattgcaggttgaggagggagctgataatgagacaaaaatccgc
acgcttccttatgttcttgttttgcaagcattttgtattgtggatcctacgctctgcact
ccagtaaccgacccttctcagtttgtggtgacacttcaaccataccttaagaatcaggct
gacagtaaatcaactgcccagttacttgaaagtataatttttgtgattgatgctgttatt
ccactcattcgaaagccaccacaaactgtggtagaagaacttgagcaggacctgaagcag
atgatagttcgccactcttttttgacggttgtacatgcctgtatcaaatgtctttctgcc
cttagcaacgcagcaggcagaggcccgaggttgttggagtaccttgttaacattttctac
aagcatctgtctagttctagctctgatagtcagctgctgggtcgatcattgttttgtctt
ggcctgctccttagatatggttataaactgttggtggcatcagagaaccaacttgatttc
ccaaagattcttgatttgcttaaaagaagatatctttacaaggaagatttcagcttaaag
gttcgagctttgcagactttgggatacatacttattgcaaagcctgaatttatgctacag
acagatattttgaatctaatagaggcatcattatcttctggtgtcgattataggatgaag
attcaaggattgcaaaacctttatgagtatctccgtgacgcggaaagccaactcacagct
gatagtaccggcaagcctaatgtaccctatgcaactaatggtggaagtgaagtgcctgtt
gctgctggtgcgggagacaccaatatatgcggtggtattatccagctgtattggaattct
attcttgaaaggtccctggatacaaacgatcaagttcgacaggctgcactaaagattgtt
gaaattgttcttcgccagggtttagttcaccccattacttgtgttccacaccttatagca
cttgaaactgacccggtggaggggaactcaaaattagctcatcatctgctgatgaatatg
aatgaaaagtatccttcattttttgaaagccgcctaggtgatggcttgcaaatgtcattt
aggtttttcgaggccatagtcagcaaccataacatggtggcaaccaacatgaaagcaaat
ccaattgcatttgttaaacctggcatatctagaatataccgtcttatccgagcaaataga
aattctagaaacaaatttgtacactcaatagtgcgcaaatttgtatcggacaaccggagt
taccccacaatcggctttcttgtatactgtgttgaagttcttgcgtcactccccttcaca
tctcctgacgaaccgctttacctggtctatgatataaatcgacttattcaaattagagct
ggagcaatcgagtctaatttgaagaattggactaccatggatcagcagcaagatgtggtg
ggtatcccgagatacattggtgatgttatgcatgagcctggcgacactggtgatgttatg
catgagcctggggacactagtgatgttatgcatgagcctgtgggctactctgatcagaac
ctggcagatattcctcaaacgatgcttaacaattcgtgcagcacgtcaggtgtggacatg
gtcaaacttcaggaagattgccataatgcgatagctctccagctccttctcaaactgaag
agacatttgaaaattgtctacagtttaactgatgctcgctgtcaggcattttctctgaag
gatcaagcaaaatctgttgaagtaatctccaagcagaatatcccacttaacattaacaac
accaacaccagtttgccgagctccctccaggatgcagcgcgtgtataccaggatttcaag
acattgctgcgagaagattccatggactatgtaatgtatactgcggagacggtccagaag
aagcggccaactccaagaagtgcgtcaaaagttaggaggccggtggctcctgtggctgtt
agaagaggccgtggtggtcgtggtcgtggtggtgacgacgatgacgacactgacgatgat
gactggactggtgggccgagggtgctagagtttggcgctcaggcagtgacaggtggccga
gtaacgaggcaaagggtccaagtatga
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integrated database retrieval system
