Lolium rigidum (rigid ryegrass): 124675035
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Entry
124675035 CDS
T09103
Name
(RefSeq) regulator of nonsense transcripts UPF3-like isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124675035
03015 mRNA surveillance pathway
124675035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124675035
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124675035
mRNA cycle factors
P-body specific factors
124675035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
124675035
NCBI-ProteinID:
XP_047067052
LinkDB
All DBs
Position
7:complement(131131721..131139048)
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AA seq
498 aa
AA seq
DB search
MKDPAHRTKVVLRRLPPAISQQAVVDQVDARFAGRYDWACFRAGNASQKNHRYSRLYLNF
KGPEDVVEFAEFFNGHVFVNEKGAQFKALVEYAPSQQVPKSNIKKDARQGTITKDPEYLE
FLELISKPTEHLPSAEIQLERKEAERAAAGKEPPVVTPLMVYVRQQRAAKSMAQRSVSSR
LSRKVSGVVTSSSSPSKRASERRRASTSSYVVRENAKEKPTYILAPKRDDHTREKIIAGT
SDGASGGSSGSPQVIDGKKDKIVLLKGRARVDSNQSLPPSRNTAPSSSRQDQRPEASGRI
IKTILSNKEGRHGIASQHEQEGHMINADKDKRPPRVPNSRSIVKDQIIENAEKSHYDDKH
NHVHGSGPIGEKIERQARNRDRPDRGVWAPRRYDKSATGGSTQASSSEFQLMQSHSEDNF
AQQADGHGERKIDTRGPGGRGGLVENGNRHGNRRGPPRGLKEMEISPITSDGKPPKRGPA
SYGAHERQVWVQKSSSGS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacccggcgcaccgcaccaaggtggtgctccgccggctgccgccggcgatttcg
cagcaggccgtcgtggaccaggtcgacgcgcgcttcgccggccgctacgattgggcttgc
ttccgcgccgggaatgccagccaaaagaatcatcgatattctcgtctctacctcaacttc
aagggcccagaagatgttgttgagtttgctgagttcttcaacggtcatgtatttgtgaat
gaaaagggtgctcaatttaaagctcttgtggaatatgcaccatcacaacaggttccgaag
tcaaatatcaagaaagatgctcgtcagggaactataacaaaagatccagaatacttggag
tttcttgagcttatatcaaagcctactgaacatttgccaagtgctgaaattcagcttgaa
aggaaagaagctgaaagagcagctgctggaaaggagccaccagttgtgacacctctcatg
gtttatgttcgtcagcaaagggcagctaagagtatggctcagaggtctgtaagcagtaga
ctaagcagaaaagtttcaggtgtggtaactagcagttctagtccttctaaaagggcctct
gaaaggcgcagagcctccacttcatcgtatgttgtgcgagaaaatgctaaggagaagcca
acttacatcttagcgccgaagagagatgatcatacaagagagaaaattattgctggaact
tcagatggtgcaagtggaggatcatctgggtctcctcaggttattgatggtaaaaaggac
aaaattgtacttttgaaagggagagcaagggttgattccaatcagtctctgcctccttcg
agaaatacggccccatcaagttctagacaagaccagcgccctgaggccagtggcagaatt
attaagactatactttcaaacaaggaaggacgccatggaatagcatctcaacatgagcaa
gaaggtcacatgattaatgctgacaaggataagcgcccaccgcgggttccgaattcgcgt
tccattgtgaaagatcagattattgaaaatgctgagaaaagccactacgatgacaagcat
aatcatgtgcatggttctggacctatcggtgagaagattgaaaggcaggccagaaataga
gataggcctgaccgtggtgtatgggcccctcgtcgctatgataagtctgcaacaggaggt
agtacgcaggcctcatcgtctgagttccagctaatgcagtcacattctgaggacaatttc
gctcagcaagcagatggccatggagagagaaaaatagacacaaggggtcctggtggccgt
ggaggccttgtggagaatggaaacaggcatggcaaccgccgtggtccgccacgtgggctg
aaggagatggagatctctcctattacatctgatggaaaacctccgaagaggggccctgct
agctatggggctcatgagagacaagtatgggttcaaaagtcaagttcaggatcgtga
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