Lolium rigidum (rigid ryegrass): 124675041
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Entry
124675041 CDS
T09103
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124675041
03015 mRNA surveillance pathway
124675041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124675041
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
124675041
5.6.2.5 RNA 5'-3' helicase
124675041
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124675041
mRNA cycle factors
Common to processing body (P body) and stress granule
124675041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_32
Ribosomal_S13_N
AAA_25
Hydin_ADK
AAA
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
124675041
NCBI-ProteinID:
XP_047067059
LinkDB
All DBs
Position
7:complement(238022164..238032871)
Genome browser
AA seq
1265 aa
AA seq
DB search
MATQPPSSAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFEYPDFPELSQPARSAP
PPPAPVTSSPSSSWPAPPPPPDASPDPDLAPQDSTPPASSSSPSPRSSASKARASAADGL
AAGVASLSFEEPPGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKWFCNS
RGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAENVVVL
LCREPCLNVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINKVEE
LWKTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKD
SLTVRWDVGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGGTSHPAWQSVGHVIKLTAQ
EEVALELRASQGVPVELNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGH
EVEHQIIRNTLPKRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAAIVYH
MAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVRHL
DNSEKSEMHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPRLS
NFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFE
RLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTINERQTTGIDFPWPVPNRPM
FFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNY
MSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRA
RYGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRRLF
LGGGQGVMHGSTFGAAGSVDKRSGRGKGHPFVPFGPPNGAHKPGVHPSGYPLPRMPFPPF
PGSPHSQPYAIPTRGSLHGAIGAVPAVPQPGSRNFGAPRANTAGPIGGHLPPHQQNSQQA
MGPTYNYPGLENPSSQPSGGGPMSQPGLMTQMPVQGLSQTFRDGFTVGGMSQDFFGDDFK
SQGSHVAYNIADFSTQASQGGYGVEYTQGPQSGYPGNYLNQSAHPGYPHMGATNDIVSQD
HMAHGSHGMFTQAGYNDPSQDESSQMHYGMGAPGHLQSQSMMNPMYSQSYAHYNTQPQSL
QPPPQ
NT seq
3798 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccttcctccgctgcggccgctgacctctacgagaccgcctcgcag
ccggacccctccgcctccgccgccggggacgcgtacaccttcctcgagttcaacacgcag
ggcgacgacttcgagtaccccgacttcccggagctctcccagcccgcccgatccgcgccg
ccgcctccggcccccgtcacctcctcaccatcctcgtcctggccggcgccgcctccgccg
cccgacgcctcgcccgaccccgatctcgcgccgcaggactccaccccaccggcctcgtcc
tcctcgccctcgccccgctcgtccgcgtccaaggcacgggcgtcagcggcggacgggctc
gccgcgggggtcgcctccctcagcttcgaggagcctcccggtgcaggagcaggggaggac
ggctacgactacggcaagggcgacttcgtggagcacgcctgccgctactgcgggatccac
aaccccgcatgtgtcgcccgctgcaacgtgccgtcctgccgcaagtggttctgcaactcg
agggggaacacctctggctcccacatcgttaaccacctggttagagcaaaacataaggaa
gtttgccttcacaaggatagccctctgggtgaaacaatccttgaatgctacaattgtggc
tgtcggaatgtattccttcttggttttatatcagcaaaggcagagaatgttgttgttctt
ctgtgcagagagccctgtttgaatgttaatgcattgaaggatatgaactgggatctcagt
cagtggtgtcctcttattgacgacaggtgtttcttatcatggcttgtcaaggttccctca
gaacaggagcagctgagagcccgtcaaattagtgcccagcaaattaacaaagtagaagag
ctctggaaaacaaatcctgatgcttctcttgaagatcttgaaaagcctggtgttgatgat
gaacctcagccagtggttttgaagtatgaagatgcttaccagtatcaaaatgtctttgct
ccgctgataaagcttgaggctgactatgacaagatgatgaaggagtcacagagcaaggac
agtctaactgtgcggtgggacgttggattgaacaagaagcgtgttgcatattttgtcttt
ccaaaggaagataatgaattgagacttgtccctggagatgagctgcgtctgagatattct
ggtggtacttcacaccctgcatggcaatctgtggggcacgtgattaaactcactgcacaa
gaggaggtagcactggagcttcgtgctagtcagggtgttcctgttgaattgaaccatgga
ttcagtgtggattttgtttggaagagtactagctttgataggatgcaaggggcaatgaag
acttttgctgtagatgagacaagtgtcagtggatacatataccaccatcttttgggccac
gaagttgagcatcagataatacgtaatacactgccaaaacgctttggtgcacctggactt
ccagaactaaatgcttcccaggtcttggcagttaaaagtgttcttcagaagcccgttagt
ttgattcaaggcccacctggcactgggaaaactgttacatcagctgcaatcgtgtaccac
atggcaaaacaaggtcaaggacaggtccttgtatgtgcaccaagtaatgttgctgttgat
cagttggcagagaagataagctcaacaggtctcaaggttgttaggctctgtgcgaaatct
agagaagctgtttcatcacctgttgagcatctgacacttcattatcaggttcggcatctc
gataattctgaaaagagcgaaatgcataagctacagcaactgaaagatgaacaaggggaa
ttatcgagcagtgatgagaaaaagtacaaggcactaaaacgagccactgaaagagagata
ttacaaagtgctgatgtgatttgctgcacttgtgttggtgctggagaccctcgtttgtca
aacttccgttttcgccaggttcttatcgatgagtctacacaggcaacagagccggaatgt
cttattccgttggttcttggtgtcaagcaggttgttcttgttggagatcattgccaattg
ggtcctgtcatcatgtgcaaaaaggcagcacgagcaggattagcacaatctctctttgag
cgccttgttatccttggagtcaagccattcaggctacaggtccaatatagaatgcaccct
tgtctttcagaatttccgtccaactgtttctatgaaggcacactgcaaaatggagtaact
ataaatgaaaggcaaacaactggaattgattttccttggcctgttccaaatcgacccatg
ttcttctatgtgcagatgggagtagaagagataagtgctagtgggacatcttacctcaat
agaactgaagctgcaaatgtagagaaaattgtgactacattcttaagaagtggtgttgtg
ccaagccagattggagttatcacaccttatgaagggcaaagggcgtatattgtaaattat
atgtcaaggaatggctctctccgccaacagctttataaggaaattgaggtggcaagtgtc
gactcctttcagggaagagaaaaagattacattattctgtcctgtgttagaagcaatgaa
caccagggtattgggtttctcaatgatccacgcaggttaaatgttgcattaactcgtgct
cggtatggtatagtcgttcttgggaatccgaaagttctaagcaagcaacctctttggaat
agcttgttgacacattacaaggagcatgagtgcttggtagagggacctttgaacaacttg
aagcagagtatggtgcaatttcaaaaacccaaaaagatctacaatgatcggagactgttc
ctgggtggtggtcaaggtgtcatgcatggatctaccttcggcgcagcaggctcagtagat
aagagaagtggtaggggaaaaggtcacccgtttgttccatttgggccgccaaatggtgct
cacaagcctggtgtgcacccatcaggctatcctttaccccgtatgccatttcctccattt
cctgggtctcctcattctcaaccctatgcaattcctacccggggatccctgcatggagcc
attggagctgttccagcggtgcctcaacctggtagcagaaactttggggctcctcgtgca
aatactgctggccctattggtgggcaccttcctcctcatcaacagaactctcagcaagct
atggggccaacttataactatcctggcttggagaacccgagcagtcagccttctggtgga
ggcccgatgtcccaacctggactgatgacacagatgcctgttcaaggtctcagtcaaacg
ttccgcgatggatttaccgttggtggaatgtctcaggacttctttggagatgattttaag
agtcaaggatctcacgtggcatacaacattgcagatttttctactcaggcttctcaaggt
ggttatggtgttgaatatacacaagggccccaatctggatatcctgggaattatttgaac
caaagtgcgcatccaggatacccacatatgggtgcaacaaatgatattgtatctcaggat
cacatggcccatggttcacatggaatgtttacacaagcgggatacaatgacccatcacaa
gacgagtcttctcagatgcattatgggatgggtgctcctggccatcttcagtcgcagagc
atgatgaatcctatgtactctcagtcttatgctcactataacacacaaccccagtccctg
cagcctcctccacagtga
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