Lolium rigidum (rigid ryegrass): 124675100
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Entry
124675100 CDS
T09103
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124675100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124675100
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124675100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
PBP1_TM
Motif
Other DBs
NCBI-GeneID:
124675100
NCBI-ProteinID:
XP_047067126
LinkDB
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Position
7:58458925..58463945
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AA seq
680 aa
AA seq
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MPRKVVSGPDYDDDEYDYEDYEDDYDDYEEVEHVDVKPPVKEKESLKKSSTAVPVLWKCS
MCTFDNHETMMYCEMCGVFRESFVKSAKDAPIKVESVNGISNNSGTSALSNSDSTKTPVK
TLTTNFDGDSERKYASTSRDKVNSAPLASVGSSPGTGKKKQPIKLSEDVPVERTTRLIPD
HFQLKEDQSSRASSSAQTKDYMQTLFSDIGQLSTERNNVNVAQPYLPEEYKPEEWMLADQ
ESGALSQLNLAIVGHVDSGKSTLSGRLLHLLGKISKRDMHKNEKEAKEKGKGSFAYAWAM
DESSEERERGVTMTVAVAYLETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDAST
GSFEAGMDGEGGKNVGQTKEHAQLIRSFGVEQLIVAVNKMDVIGYSKERLEFIKAQLGSF
LRACNFRDSAITWIPLSAVENQNLAKPPSDARFTSWYQGLCLLDAIDSLQLPSRDVSKAL
ILPICDVIKSQSTGQLAAFGKLETGAIRNGSKVLVLPCGEVATVKTIERDSRSCSIARAG
DNVAICLQGVDGNRIIPGGILCHPGFPVPVANYLELKIRVLDITLPILLGHQVEFHIHHV
KEAARITKILALLDKTGKPSKAPPRFLKSKQSAVVQVTLDGAICVEEFSKCRALGRAFLR
ASGSTIAVGIVTKIMGQDQY
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgcaaggttgtctccggtcccgactacgacgacgacgagtacgactatgaggat
tacgaggatgactatgatgattacgaggaggttgagcacgtcgatgttaagcccccggtg
aaggagaaagaatcattgaagaagtcctcaaccgcagtgcctgtgctttggaaatgctcc
atgtgcacatttgataatcatgaaactatgatgtactgtgagatgtgtggggttttccgg
gaatcttttgtcaaatctgccaaggatgctccgataaaagtagaatccgtcaatggaata
tcaaacaattctgggacatctgcactgtcaaactctgattctaccaagacgccagtgaag
actcttactacaaattttgacggtgattctgagagaaagtatgctagcacatcacgtgat
aaagtcaattccgcaccattggcatctgttggtagctcaccaggcactggaaaaaagaag
caaccgattaaactttctgaagatgtgcctgtcgagaggacaactcgactgattcctgat
cattttcagttaaaggaggaccagagtagtagggctagcagttctgctcagactaaggat
tatatgcagacacttttttctgacataggccagctaagtacagaaaggaataatgtaaat
gttgcacaaccttatttacctgaagagtataagccggaggagtggatgctagctgatcag
gagtccggggcgctaagccaactaaatcttgcaatagtgggtcatgttgattctggtaag
tcaacactctctgggagattgctacacctactaggaaagatatcgaaaagagatatgcac
aaaaatgagaaggaggctaaggaaaaaggaaaggggtcatttgcttatgcatgggccatg
gatgagagcagtgaagaaagagaaagaggtgtcacaatgacagtggctgttgcttatttg
gaaaccaagaaataccgtgtagttttgcttgactctcctggccacaaagattttgtgcca
aatatgatatctggtgcaacacaagctgatgcagctattcttgtggttgatgcttcaact
ggttcttttgaagctggcatggatggtgaaggaggaaaaaatgttgggcagacaaaggag
catgctcagcttattagaagctttggtgttgaacagcttattgttgctgtcaacaagatg
gatgttatcgggtactcaaaagaaaggttggagttcatcaaggcacaacttggtagcttt
ctgcgggcatgcaacttcagagattcagctattacctggattcctcttagtgctgtagaa
aatcagaatttggctaaacctccttcagatgctcgttttacctcctggtatcaagggttg
tgtctcctggatgctatagattccctgcagcttccttctcgggatgtttcaaaggctctc
attcttcctatatgtgatgttatcaagtctcagtcgacaggacagctggcagcttttgga
aaattggaaactggagctattcgaaatggttcaaaggtcttagttttaccttgtggggaa
gtggcgacagtgaaaaccatcgaacgggactctaggtcatgcagcatagcgagggctggt
gacaatgtagcgatttgtctacagggtgttgatgggaatcgaataatacctggtgggatt
ctttgccaccctggtttcccggtacctgtagctaactacttggagctaaagattcgtgta
ttggacatcacccttcctattcttcttggtcatcaggtggagtttcacatacatcatgtg
aaggaagctgcaagaataacaaaaatcttggcattgcttgacaagacagggaagccaagt
aaagcaccgccacggtttcttaaatcaaagcagagtgctgttgtgcaggttacgctagat
ggagcgatctgtgttgaggaattctccaaatgccgagctcttggaagggcattcttaagg
gcgtctggaagcacgattgctgtcggtatagtaactaagataatggggcaggatcagtac
tag
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