Lolium rigidum (rigid ryegrass): 124675250
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Entry
124675250 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 6
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124675250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124675250
03036 Chromosome and associated proteins [BR:
lrd03036
]
124675250
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124675250
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124675250
mRNA degradation factors
5'-3' decay
Decapping complex
124675250
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124675250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
NA-iREase2
Motif
Other DBs
NCBI-GeneID:
124675250
NCBI-ProteinID:
XP_047067275
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All DBs
Position
7:74443114..74450288
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AA seq
483 aa
AA seq
DB search
MDQRARFPPGIGNGPGGNPNFYGRGPPPTQQHHQQRHSQHHNQQLQHQQWLGRNQVAGEA
AGTSRASEQHAPPVADDVDLSSQDWKAQLKLPPPDTRYQTEDVTATKGNEFEDYFLKREL
LMGIYEKGFERPSPIQEESIPIALTGSNILARAKNGTGKTAAFCIPALEKIDQEKNAIQV
VILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIVRLYQPVHLLVGTPGRVLD
LTKKGICILKDCSMLIMDEADKLLSPEFQPSVEQLIRYLPSSRQILMFSATFPVTVKAFK
DKYLPKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVE
LLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVIN
FDFPKNAETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKPIPPQIDRTI
YCQ
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggatcagcgggcgaggttccctcccggcatcggcaacggccccggcgggaaccctaat
ttctacggccgtggcccgccaccgacgcagcagcatcaccagcagcggcactcgcagcac
cacaaccagcagcttcagcatcaacagtggctaggacggaatcaggtcgctggcgaggcc
gcaggcacctccagagccagcgagcagcacgcgccgcctgttgccgatgacgtcgatttg
agttcgcaagactggaaggcccaattgaagctcccacctccagatacacgctaccagaca
gaggatgtcactgcaactaagggaaatgaatttgaagactattttctgaagcgtgaactt
cttatgggcatatatgagaaaggatttgaaagaccttctcctatccaagaagaaagcatt
cctattgcactaaccggcagcaacattcttgcaagggcaaaaaatggaactggcaagact
gccgcattttgtataccagcgctagaaaagattgatcaagagaaaaatgctattcaagtt
gttatattggtccccacgagggaactggctttacaaacgtcacaagtctgcaaagaactt
gggaagcacctgaagattcaagtcatggtcactactggaggaacaagcctaaaggatgat
atcgtccgtctttatcaacctgttcatttacttgttgggacgcctggtcgtgttttggac
cttacaaagaaaggcatttgcatcctgaaggactgttcaatgcttattatggatgaggca
gacaagcttctttctcccgagttccaaccttctgtggaacagttaattcgataccttcca
tcgagtcgacagattctaatgttctctgcaacattccctgtgactgtcaaggctttcaag
gacaaatatctccctaaaccctatgttattaaccttatggacgaacttacattgaaggga
attacccagttctatgcttttgttgaagaaaggcagaaagttcattgtctgaatactctt
ttttccaagctgcaaattaatcaatcaataatattctgtaactctgtaaatcgtgttgaa
ttattggcgaagaagatcacggagcttggttactcttgcttctacatccatgctaaaatg
ctgcaagatcatcgtaatagagtattccatgatttccgtaatggtgcatgcaggaacctt
gtgtgtacagatctttttacaaggggaatagatatccaagctgttaatgttgttatcaat
tttgatttccccaagaacgctgaaacctatctccacagggttggtagatctgggagattt
ggccaccttggcctggctgtgaatctgatcacctatgaggatcgctttaacttgtatcgg
attgagcaggagcttggaactgagataaaacctatacctcctcagatagataggacgata
tattgccaatag
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