Lolium rigidum (rigid ryegrass): 124675254
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Entry
124675254 CDS
T09103
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A-like
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124675254
09122 Translation
03013 Nucleocytoplasmic transport
124675254
03015 mRNA surveillance pathway
124675254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124675254
03041 Spliceosome [BR:
lrd03041
]
124675254
03009 Ribosome biogenesis [BR:
lrd03009
]
124675254
03012 Translation factors [BR:
lrd03012
]
124675254
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124675254
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124675254
mRNA cycle factors
Stress granule specific factors
124675254
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124675254
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
90S particles
Helicases
124675254
Translation factors [BR:
lrd03012
]
Eukaryotic type
Initiation factors
eIF-4
124675254
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA
AAA_22
Cas3-like_C_2
AAA_30
TniB
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
124675254
NCBI-ProteinID:
XP_047067277
LinkDB
All DBs
Position
7:complement(28153513..28158058)
Genome browser
AA seq
406 aa
AA seq
DB search
MATTSRRGPGGGARPMDDENLTFETSAGVEVVGSFDAMGIRDELLRGIYGYGFEKPSAIQ
QRAVLPIITGRDVIAQAQSGTGKTSMISLSVCQIVDTSVREVQALILSPTRELATQTERV
MQAVGQFMSVDVHACVGGKSIGEDIRKLEAGVQVVSGTPGRVCDMIKRRTLRTRAIKILI
LDEADEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHDILEITSKFMTDPVRILVKRDE
LTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRTNNFTVS
AMHGDMPQKERDAIMNEFRGGSTRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRI
GRSGRFGRKGVAINFVRKDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccacctcccggcgcggccccggcggcggggcccggccgatggacgacgagaac
ctgaccttcgagacctcggcgggggtggaggtcgtgggcagcttcgacgccatgggcatc
cgcgacgagctgctccgcggcatctacggctacggcttcgagaagccctcggccatccag
cagcgcgccgtgctccccatcatcacgggccgcgacgtcatcgcgcaggcccagtccggc
accggcaagacctccatgatctccctctccgtctgccagatcgtcgacacctccgtccgc
gaggtgcaagcattgatactgtcgccgactagagagcttgcaacgcagaccgagagagtg
atgcaggctgttggccagttcatgagtgtggatgtccatgcttgtgtcggtggcaaaagt
atcggcgaggatattaggaagcttgaggctggagtgcaggttgtgtccggaacaccgggc
agagtctgtgatatgatcaagaggaggaccttgcgcacaagggccatcaagatcctgatt
ctggatgaagccgatgagatgttgagcagaggttttaaggaccagatatatgatgtctac
agatatctccccccagaacttcaggttgttttgatctctgcaactctgccccatgacata
ttggagattactagcaagttcatgactgatccagtcaggatccttgtgaagcgtgatgag
ttgaccctagagggaatcaaacaattttttgttgctgtggagaaggaggaatggaagttt
gataccctatgcgatctttatgatacattgacaatcacccaagctgtcattttctgcaat
actaagcgaaaggtggattggcttaccgaaagaatgcgcaccaacaatttcacggtatca
gccatgcatggtgacatgcctcagaaggaaagggatgccattatgaatgagttcaggggt
ggttcaacccgtgttttaatcacaacagatgtttgggctcgaggactggatgttcagcag
gtctctcttgtcattaattatgatctccctaataatcgtgagctctacatccatcgtatt
ggtcgttctgggcgttttggacggaagggtgtggcgatcaactttgtgcgcaaggatgac
atccgtatcctgagagacatcgagcagtactacagcacacagatcgacgagatgccgatg
aacgttgctgatctgatctga
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