KEGG   Lolium rigidum (rigid ryegrass): 124675908
Entry
124675908         CDS       T09103                                 
Name
(RefSeq) histone deacetylase 6-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03082  ATP-dependent chromatin remodeling
lrd03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    124675908
   03083 Polycomb repressive complex
    124675908
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lrd03036]
    124675908
Enzymes [BR:lrd01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     124675908
Chromosome and associated proteins [BR:lrd03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     124675908
   HDAC complexes
    Sin3A-HDAC complex
     124675908
    BRAF-HDAC complex
     124675908
    REST complex
     124675908
    SHIP complex
     124675908
    MiDAC complex
     124675908
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     124675908
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    124675908
  Chromatin remodeling factors
   NuRD complex
    124675908
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 124675908
NCBI-ProteinID: XP_047067936
LinkDB
Position
7:complement(158851099..158855433)
AA seq 458 aa
MAASGEGASLPSPAGGDDGRRRRVSYFYEPTIGDYYYGQGHPMKPHRIRMAHSLVVHYGL
HRLLELSRPFPASKADIGRFHSEDYVSFLASATGNPNILAPSTVKRFNVGEDCPVFDGLF
PFCQASAGGSIGAAVKLNRGDADITVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKFH
RRVLYVDIDVHHGDGVEEAFFTTNRVMTVSFHKYGDFFPGTGHITDIGAGEGKHYAVNVP
LCDGIDDATFRDLFQCIIKRVMEVYQPEVVVLQCGADSLAGDRLGCFNLSVKGHADCLRF
LRSFNVPMMLLGGGGYTIRNVARCWCYETAVAVGVEPENKLPYNDYYEYFGPDYNLHIEP
RTVEDLNKKNDLENIKNMILEHLSKLEHVPSVQFHDRPSDPEGPEEMEEDMDKRPAQRSR
LWSGGAYDSDTEDPENMKSKTNELTAKSILKDESNDDL
NT seq 1377 nt   +upstreamnt  +downstreamnt
atggcggcttccggcgagggagcgtcgctgccgtctccggcgggtggcgacgacggccgc
cgccgtcgcgtgagctacttctacgagcccacgattggcgactactactacgggcagggc
cacccgatgaagccgcaccgcatccgcatggcgcactcgctagtcgtccactacggtctg
caccgcctactcgagctctcccgccccttccccgcctccaaagccgacatcggccgcttc
cactccgaggattacgtctccttcctcgcctccgccaccggcaaccccaacatcctcgcc
cccagcaccgtcaagcgcttcaacgtcggggaggactgccccgtctttgacggcctcttc
cccttctgccaggcctccgccgggggtagcatcggcgccgccgtcaagctcaaccggggc
gacgccgacatcaccgtcaactgggccggcggcctccaccacgccaagaagagcgaggca
tctgggttctgctatgtcaacgacatcgtcctcgccatcctcgagcttttgaagttccac
aggcgtgtgctatacgtagacattgatgtccaccacggagatggtgtggaggaggccttc
ttcactacgaaccgagtcatgactgtttctttccacaagtatggggacttctttcctgga
acaggacatataactgatattggagcaggtgaagggaaacattatgctgtaaatgtcccc
ctgtgtgatggcattgatgatgccaccttccgtgatttgttccaatgcatcattaagaga
gtaatggaggtttatcagccagaggtagttgttctccaatgtggcgctgactctttggct
ggagataggttaggttgcttcaatctgtctgtaaaaggccatgcagactgccttcgtttc
cttaggtcattcaatgttcctatgatgcttttggggggtggaggttacaccatcagaaat
gttgctcgctgctggtgctatgagactgcagttgctgttggcgttgaacctgagaacaag
ttgccttataatgactactatgagtactttggccctgactataatcttcacattgaacca
agaactgtggaagatctgaataagaaaaatgacttggagaatataaagaacatgatactg
gagcatctttcaaaattagaacatgttccaagcgttcaattccatgacagaccatcagat
cctgaaggcccagaagagatggaggaggatatggacaagagaccagctcagcgcagcaga
ttatggagcggaggagcttatgattctgacacagaagatcctgagaacatgaaaagcaag
actaacgagttaactgccaaatctatcttgaaggatgaatcgaatgatgatttgtag

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