Lolium rigidum (rigid ryegrass): 124676246
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Entry
124676246 CDS
T09103
Name
(RefSeq) uncharacterized protein LOC124676246
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124676246
09122 Translation
03013 Nucleocytoplasmic transport
124676246
03015 mRNA surveillance pathway
124676246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124676246
03041 Spliceosome [BR:
lrd03041
]
124676246
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124676246
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124676246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAP
RSB_motif
DAP_epimerase
Motif
Other DBs
NCBI-GeneID:
124676246
NCBI-ProteinID:
XP_047068278
LinkDB
All DBs
Position
7:complement(343313431..343317536)
Genome browser
AA seq
1047 aa
AA seq
DB search
MSTYPVLNDQPIDQWKVTDLKDELCRRNLPISGLKEDLVKRLFEDLQGDVLGREGTVDGS
SPGDDLKVDKTTASADASVCQAVMEPSVDENPSRVSTQSGDLVVSVTEVSKESEVATGKF
VVTTEEVSQKPLAAAAAAEVSDAPLVDVLTTNKISQSGAAATKQDDLESAPSDSTMVKDV
HEQAGGHSEFIAEKALEEDAAKKTIVDYLFATTDVKLDVTPAKGKLDDDILEHEVVPSPP
DAIVPHADHWDLDAVAPALGHNGDALIPKISSVDSDLMNCKDHEDSGRTSNACKLTIPGP
IDQTAGTLPATMPTYPVLKNRPIDQWKVTELKDGLSKRNLPIKGLKDDLVKRLFKNLEGD
ILGGSPCSYDLKVDRTPGSADASVCQDVIEQNVDEGPSQVATQEGSSDTTTDVSEDAVAT
TEEVNQTTLVAATDSDSPLVDSATADTISLSDTVATKRDDLESAPSDGAILKGASLKADC
HSKIIAEKAPEEGTVKEAILDYVPYDVASAKVKLDATSAKGKLDADIVDKEALLSLPDAI
ALHTDHLDVHATATAPGQNAETLIPKIDSGDNAFMSSKDREDSGHTNDACKPSLSGTKDQ
VSEANPDVGSQIKCVLISHEDISTNVKGDLNADNSDLELEAKRDMVKPQPCRIPSVGDDL
QALDDEKQLCKKGTPLQEKRSMTNMDLDKKEDSPNGVSPEKVNLERTSGNESIEEDAMES
KHVIPNIRSDDVGREIEVTSDHEVKEVVLFDTVDSSVQTKDNVAKEKSVAPSEKRKPEDQ
VVAVDPNKRQRRVDSVKLPKEQTSTSSSICPKGVVQPAIKRSFGRSGSVASGDSHIERTV
PLSQKPATTSLKIDRFVRPFTLKAVQELLGRTGSICSFWMDHIKTHCYVTYSSVDEAVAT
RNAVYNLQWPLNNGSYLLAEFVDPREVKLKLEHPPPPPAPISLSKDTTQQAVGFQQSKPN
QTILPDDVGALRGLLPTPQPLKLFPASKPRSDRDMLPPPPKEVKAPAMSLADLFKQTQAS
PMIYYLPLTEEEVAAKLAARSRRRKRG
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacgtatcctgtgctgaatgaccagccaattgaccagtggaaggtcacggatctg
aaggatgagctctgtaggaggaacctacctatcagcggtttgaaggaagatcttgtcaaa
aggctctttgaggacctgcagggtgatgtacttggcagagaaggaacagttgatggatct
tcccctggtgatgatctgaaagtggacaaaacaactgcttctgctgatgcatctgtttgc
caggctgtgatggaaccaagcgttgatgaaaatccttctcgggtttcaacgcaaagcggg
gatcttgttgtttctgttacagaagttagcaaggaaagtgaagttgctactggaaaattt
gttgttactactgaagaagttagtcagaaacctcttgctgctgctgctgctgcagaagtt
agtgatgccccactagttgatgtgttgacaactaataaaatttctcaaagtggtgcagcg
gcaactaaacaagatgatctagaatcagcgccatctgacagtactatggtgaaggatgta
catgaacaagctggtggtcatagtgagtttattgcagagaaggctctagaagaagatgct
gccaagaaaacgattgttgattatctatttgccactactgatgtcaagttggatgtgact
cctgctaaaggcaagttagacgacgacattctagagcatgaagtggtaccatcacctccg
gatgcgattgtgcctcatgctgaccattgggatcttgatgctgttgcacctgcactagga
cataatggtgatgccctgattcctaagataagttcggttgacagtgatttgatgaactgc
aaggatcacgaagattctgggcgcacaagcaatgcttgcaaactaaccatacctggacca
atagaccagacagctggaaccttgccagcgacaatgccgacatatcctgtgctaaagaac
cgaccaattgatcagtggaaggtcacagaactgaaggatggtctctctaagaggaaccta
cctatcaaaggtttgaaagacgatcttgtgaaaaggctctttaagaaccttgagggtgat
atacttggtggatctccctgcagttatgatctcaaagtggacagaactcctggttctgcg
gatgcatctgtttgccaggatgtgatcgaacaaaatgttgatgaaggtccttctcaggtt
gcaactcaggaaggaagttccgacactactacagatgttagtgaggatgctgtagctact
accgaagaagttaatcagaccactcttgttgctgctacagatagtgattctcctctagtt
gattctgcaacagctgatacaatttctctaagtgatacagtggcaactaaaagagatgat
ctagaatcagctccaagtgatggtgctatattgaagggagcatctctaaaagctgattgc
catagtaagataattgcagagaaggctccagaagaaggcaccgtcaaggaagctattctt
gattatgtaccatatgatgtagccagtgctaaagttaagttggatgcaacctctgctaaa
ggcaagttagacgctgatatcgtagataaggaagcactattatcacttccagatgctatc
gcactacatactgatcacttggatgttcatgctactgcaactgcacctggccagaatgct
gagactttgattccaaagatagattcgggtgacaatgctttcatgagcagcaaggaccgc
gaagattctgggcacacaaatgatgcctgcaaaccatccctgtcaggaacaaaggaccag
gtctctgaggccaaccctgatgtaggttctcaaatcaagtgtgtattgatttcgcatgag
gatatatcaactaatgtaaagggtgatctgaatgctgacaattctgatttggaactagag
gctaaacgggatatggtcaaaccacaaccgtgcagaattccctccgtaggtgatgatttg
caggcattggacgatgaaaagcagttgtgtaagaagggaaccccattgcaagaaaaaaga
tctatgaccaatatggacttggacaagaaagaggacagtcccaatggtgtttctcctgaa
aaagtaaatttagagaggacctcaggtaatgaatcgatagaggaggatgccatggaaagt
aagcatgttattcccaatatcagatctgatgatgttggaagagaaattgaggttacctcg
gaccatgaggtaaaagaggtggtgctctttgatactgttgattcatctgtgcaaacaaag
gataatgtagccaaggagaaatcagtagctccatctgaaaagaggaaaccggaagaccaa
gttgttgcagttgaccccaacaaacgtcaacgccgtgtggatagtgtcaaacttcctaag
gaacaaacatccacaagcagctctatttgtccaaagggtgtggttcagcctgctataaaa
cgttcttttggcaggtctggttcagtggcaagtggagattcccacatagagcggacagtg
ccactttctcagaagcctgcaactacttccttgaaaattgatcgatttgtgcgtccattt
actctgaaagctgtgcaagagcttcttggtagaactggatctatttgcagcttttggatg
gatcatatcaagactcactgctacgttacatactcttcagtggatgaagccgtggctacc
aggaatgctgtttacaacctccaatggcccctaaacaatggcagttacttacttgccgaa
tttgttgatccacgtgaggtgaagctcaaacttgaacaccctcctccaccgccagcaccg
atcagcctcagcaaagatacaactcaacaggcagtaggcttccaacaatcaaagcctaac
caaaccatccttcccgatgacgtgggtgccttgaggggtctgttgcctactccgcaacct
ctgaagttgtttccggcctctaagcctcggtcagatagggatatgcttccaccccctcca
aaggaagttaaagcacctgccatgtcgcttgctgatctcttcaagcagacacaggcctct
ccgatgatttactacctgcccttgacagaagaggaggtggcagccaagctcgcagcacgc
agcaggcggaggaagagagggtag
DBGET
integrated database retrieval system
