Lolium rigidum (rigid ryegrass): 124676563
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Entry
124676563 CDS
T09103
Name
(RefSeq) sm-like protein LSM7
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124676563
09123 Folding, sorting and degradation
03018 RNA degradation
124676563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124676563
03041 Spliceosome [BR:
lrd03041
]
124676563
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124676563
mRNA degradation factors
5'-3' decay
Lsm complex
124676563
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
124676563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
DUF150_C
Hfq
Motif
Other DBs
NCBI-GeneID:
124676563
NCBI-ProteinID:
XP_047068560
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Position
7:complement(10052841..10055576)
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AA seq
100 aa
AA seq
DB search
MAGRKETALDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVESEREQDDPLKL
TTKTRQLGLIVCRGTAVMLVSPTDGTDEIANPFLAADGAS
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atggcggggcgcaaggagaccgcgcttgacctagccaagttcgtcgacaagggcgtccag
gtcaagctcaccggcggccgccaagttactggaactttgaagggctatgaccagttgctg
aacctagtgctggatgaagcagttgagtctgaaagagagcaagatgacccattgaaactg
acaacgaagaccagacaacttggtctcatagtgtgtagaggtactgcagtcatgctggtg
tcaccaactgatggaactgatgagattgccaacccttttcttgcagccgatggagcatca
taa
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