KEGG   Lolium rigidum (rigid ryegrass): 124677955
Entry
124677955         CDS       T09103                                 
Name
(RefSeq) histone deacetylase 9-like
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03082  ATP-dependent chromatin remodeling
lrd03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    124677955
   03083 Polycomb repressive complex
    124677955
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:lrd03036]
    124677955
Enzymes [BR:lrd01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     124677955
Chromosome and associated proteins [BR:lrd03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     124677955
   HDAC complexes
    Sin3A-HDAC complex
     124677955
    BRAF-HDAC complex
     124677955
    REST complex
     124677955
    SHIP complex
     124677955
    MiDAC complex
     124677955
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     124677955
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    124677955
  Chromatin remodeling factors
   NuRD complex
    124677955
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 124677955
NCBI-ProteinID: XP_047069844
LinkDB
Position
7:complement(145279970..145285071)
AA seq 430 aa
MLEKDRISYFYDGDVGNVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPTEL
AQFHSADYVEFLHRITPDTQHLYASELTRFNLGEDCPVFDDLFEFCQIYAGGTLDAARRL
NHKLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKYGDLFFPGTGDIKDIGDREGKYYAINIPLKDGIDDNSFTRLFKT
IIAKVVETYLPGAIVLQCGADSLARDRLGCFNLSIEGHAECVKFVKKFKIPLLVTGGGGY
TKENVARCWAVETGVLLDTELPNDIPDNEYIKYFGPDYTLKVPNLSMDNLNSKSYLSSIK
VQVMESLRAIQHAPGVQMQEVPPDFYVPDFDEDELDPDERVDQHTQDKQIHRDDEYYEGD
NDNDHDDGAH
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgctggagaaagacaggatatcctacttctacgatggggatgttggcaatgtgtacttc
gggccaaatcacccgatgaaaccgcatcgtctttgtatgacacatcatcttgtgctttcg
tatgatcttcacaagaagatggagatatatagaccccacaaagcatatccaacagagcta
gcccagttccattctgctgattatgtggaattcttgcaccggataactcctgatactcag
cacttgtatgcaagtgaattgactagattcaatcttggagaggactgcccggtctttgat
gatttgtttgagttctgccaaatctatgctggaggaactctagatgcggctcgaaggtta
aatcataaattatgtgatattgccattaattgggctggtgggctgcatcatgcaaagaag
tgtgaggcatcaggcttctgctacattaatgatctggttttggggattctggagcttctc
aagtatcatgctagggttctctatattgacattgatgttcatcatggagatggagttgaa
gaagccttctatttcactgacagggtaatgactgtaagtttccacaagtatggtgatctg
ttctttcctggcactggtgatattaaggatataggagacagggaaggaaaatattacgcc
atcaacatcccacttaaagatggcatagatgacaacagctttactcggctcttcaaaacg
attattgccaaggttgttgagacttatctgccaggtgctattgttcttcaatgtggggct
gattcattggcacgagaccgtctagggtgtttcaatctttcaattgaaggccatgctgaa
tgtgtgaagtttgtcaagaaatttaaaattcccctgctggtgacgggaggtggtggatac
accaaagagaatgtagcacgctgttgggctgttgaaactggagtccttctagacacagag
ctcccaaatgacatccccgacaatgaatatattaaatacttcggtccagactatacattg
aaagtaccaaatctgagcatggacaacttgaatagcaagagctatctgagttcaatcaaa
gtgcaagtgatggagagtttgcgggccatacagcatgcacctggagttcagatgcaagag
gttccacctgatttctatgtcccagactttgatgaagatgagctggatcctgatgaacgc
gtcgaccagcacacccaagacaagcagattcaccgcgacgacgagtactacgaaggcgac
aacgacaatgatcatgacgatggtgcacattga

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