Lolium rigidum (rigid ryegrass): 124678100
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Entry
124678100 CDS
T09103
Name
(RefSeq) histone deacetylase 15-like isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
lrd01009
]
124678100
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124678100
04131 Membrane trafficking [BR:
lrd04131
]
124678100
03036 Chromosome and associated proteins [BR:
lrd03036
]
124678100
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
124678100
Protein phosphatases and associated proteins [BR:
lrd01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124678100
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
124678100
Membrane trafficking [BR:
lrd04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124678100
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
124678100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
NapB
Motif
Other DBs
NCBI-GeneID:
124678100
NCBI-ProteinID:
XP_047069984
LinkDB
All DBs
Position
7:193948772..193960037
Genome browser
AA seq
606 aa
AA seq
DB search
MRPPNSKKCEVPSHGRQNGGDQAFHGKCQSCDGVEKPSHSRENGVSLKEHRGTGSFNGDH
TDALSVDGAKGSLTISGHVDSAGCGHDGCLHGNNGSCMACDDQEYDREQGGHTLDDLFFF
NDEEEDDIDWEPSARRVENRWFCLNCTVPNLDEVTHCQNCHELKGSEVAGYDDFKTHISQ
TALVSADTASQLVSTAIGFDERMLLHSEIEIKPNPHPERPDRLRAIAASLAAAGIFPSKC
ALVPPREITKEELIRVHTSDHVESIEQTKNMLYSYFTSDTYANGHSACAAKLAAGLCADL
ASLILSGGVRNGFALVRPPGHHAGVKQAMGFCLHNNAAVAALAAQKAGAKKVLIVDWDVH
HGNGTQEIFEGDKSVLYISLHRHEDGSFYPGTGAAHEVGVLAGEGFSVNIPWSCGGVGDN
DYIFAFEHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMASMLTACSEGK
LLIILEGGYNLRSISSSATEVVKVLLGDSPSHSTDAAAPSNEGMQTVLQVLEIQQKYWPV
LVPIFASLQALQGRSSSKYVNGENKLKRRMLATGPGPVWWKWGSKRLLYEVLFEGFGPRK
SKAKGK
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgagacctcctaacagcaaaaagtgcgaggtgccttcacatggccgtcagaatggtgga
gaccaagcttttcatggcaaatgtcaaagctgcgatggtgttgaaaaaccatctcattct
agagagaatggtgtttcgctgaaagaacaccgtggaacaggcagttttaatggtgatcat
actgatgctttatcagtagatggggcgaaaggttctctcacaatatcaggacatgttgac
agcgcaggttgtggtcatgatggttgtcttcatggcaataatggtagttgcatggcctgc
gatgatcaagagtatgatagagaacaaggtggacataccctggatgatctgttcttcttc
aacgatgaagaggaggatgatattgactgggaaccttctgctcgccgtgttgagaacaga
tggttttgtttgaactgtacagtaccaaacttggatgaggttacacattgccagaattgc
catgagcttaagggatctgaggtagctggatatgatgatttcaaaactcacatttcacag
acagctttggtatctgctgatacagcatcgcaactggtatctacagccattggctttgac
gaaagaatgttactccacagtgagatcgaaattaaaccaaatccacatccagaaaggcct
gatcgtctccgtgcaattgctgctagtctggctgctgcaggaatatttccctcaaaatgc
gccttagtacctcctcgagaaatcactaaggaggaactcataagggtccatacttcagat
catgttgaaagcatcgagcagaccaagaacatgctttacagttacttcacttcggatact
tacgcaaatggacactcagcatgtgctgcgaaacttgcagcaggtctatgtgctgatctt
gctagtttgatactgtctgggggtgtccgcaatggctttgcactggtgagacctcctggg
catcatgctggggtaaagcaagccatgggtttttgtcttcacaacaatgcagcagtggct
gcattagctgcacaaaaagcgggtgccaagaaagtgttgatagttgactgggatgtgcac
catggaaatggcacacaggagatatttgaaggggacaaatcagttctgtatatatcatta
catcgccatgaggatggaagcttctaccctggaactggagcagcacatgaggtgggagtt
ctagctggtgaaggattctcggtcaatataccttggagctgtggaggtgttggagacaat
gactacatctttgcttttgagcatgtggtgcttccaattgctgcagaatttgccccagac
atcaccattatatctgcaggatttgatgcagcaaggggtgatcctctgggctgttgcgat
gtcactcctgccggttactctcggatggcgtccatgctaactgcttgttcagaaggaaaa
ttgttgattatacttgagggaggatacaatcttcggtctatatcctcatcggctactgaa
gttgtcaaggtcctacttggggatagtccaagtcatagtacagatgcagctgcaccatca
aatgagggcatgcagactgtcttacaagttctggagatccagcaaaagtattggccagtt
ttggttccaatctttgcatcgctccaggcattgcaggggcggagttcttccaaatatgtt
aatggggaaaacaaactgaagagaaggatgcttgcgacaggaccagggcccgtgtggtgg
aaatggggaagcaagaggcttttgtacgaagttctgtttgagggattcggtccaagaaag
agcaaggccaaaggaaaatga
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