Lolium rigidum (rigid ryegrass): 124680974
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Entry
124680974 CDS
T09103
Name
(RefSeq) splicing factor 3B subunit 3 isoform X1
KO
K12830
splicing factor 3B subunit 3
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124680974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124680974
03041 Spliceosome [BR:
lrd03041
]
124680974
03036 Chromosome and associated proteins [BR:
lrd03036
]
124680974
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124680974
Spliceosome [BR:
lrd03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124680974
Complex B
124680974
Complex C
U2 SnRNP specific factors
124680974
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
124680974
TFTC complex
124680974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Motif
Other DBs
NCBI-GeneID:
124680974
NCBI-ProteinID:
XP_047071939
LinkDB
All DBs
Position
Unknown
AA seq
1362 aa
AA seq
DB search
MESSASGDGSSAADAATATAAAAPSSSSGPSTSAPAFSAGGVAGPSATHYLAKRVLHGSA
VQHVARGRFRSEHLWEIVLCKETSLELVVVGEDGVLQSICEQSTFGIIKDVGVLDWRFKQ
FGIWPEIEGKEILVLLSDSGKLSLLYFSCQMHRFIAIGNIELSKPGNMRDQLGRILAIDH
DSAWIAISAYEDAFAFVHVGKSPHVYGPNREIVERANIMHVVYKTSDIRGTVWSMCFMRT
RCSMDEYYPVVAMIINRKGSDVNELSVYALAANDGGIQHLSSFSEPGPLALDISEIPQLD
GFALLFRAGDILFVDLREPKDICCTIRISITGSLIGGQISVEDSCRGLDVDDDVAACALL
ELRDSGNNIMMDDNYMAIDGVDNAGSMKSRIICSWSWEPDAVRGRPRLIFCLDDGEFHTL
EFNWDVEGVKVLPERVHRGLPCRPLLWLNRGMIAGFVEMGDGMILQLEHGRLVHKSAVQN
VGPILDLAIADYHGEKQDQMFSCCGMCPEGSLRVIRNGINVEKLLRTEPIYQGVTGLWTL
RMKRTDTYHSFLILAFVEETRVLSVGLSFNDISDAVGFQPDVCTLACGLIADGLLVQIHS
KGVKLCLPTTYAHPEGAPLSSPVSFVWYPDVTISVGAVGQNMVAVATSNPCCLYILRVRS
LSSFQYELYETQHVQLQYEVSCISIPEEDSKLRTVSSAVGGGDVRKRKGNNLAAKVDVRM
FAVIGTHKPSVEVVSLEPEEAFRLLSIGSISVNNAFGAPISGCIPENVRFVASERFYILA
GLRNGMLLRFESDTSKDHYFPGSFYKDSFTPCVNTPLQLIAIRHIGITPVGLVALRDSAN
ADIIVLSDRSWLLHASRHSLAYSSISFLPASHVTPVSSADCPSGLLFVAENCLHLVEMVH
GKRLNAQKFSIGGTPRKVLYHSDSRTLLVMRTGLTGASCSSDIVQIDPNNGTLLSRFKCE
PGETARCIQIAKIGSEQVLIVGTSKSNDHPMMPNGEAESSIKGRLIVLSLDTLGSPRESS
SFIPTSNLSSSSHTGSFPEIVGYATEELSSNSMCSSPDDVCYNQIQLEQMTGHLRSLTHV
TFAGAVLAVYPYLDRYVLAAAGNTLCVFCFVNENPHRMKKYAVSRTRFTITCLKTYASRI
AVGDCRDGLLFYSYNESLRKLELIYADPAQRLVGDVALLNCETAVVSDRCGSISVLSCPR
LEVSESPEKNLAVHCSFFMGEIAMSIQKAAFRYRLPIDNETDPVLESAYNCVVASTMLGS
VFVLIPLTSEEHHLLQDVQERLSVHQLTAPLLGNDHAEFRRRGIPSGVPSILDGDMLVQF
LELTSEQQQTILDAAPSGKGPPRSISIFQVMRTLERVHYALN
NT seq
4089 nt
NT seq
+upstream
nt +downstream
nt
atggagtcttccgcctccggcgacggttcgtccgccgccgatgctgctactgctactgcg
gcggcggcgccgtcgtcctcctcaggtccctcgacctctgcccccgccttctccgccgga
ggcgtcgccgggcccagcgccacccactacctcgccaagcgcgtgctccacggcagcgcc
gtgcagcacgtcgcccgtggccgtttccgctccgagcacctctgggagatcgtactctgc
aaggaaacttcactagaattggttgtggttggtgaggatggtgttttacagtcaatctgc
gagcaaagtacatttggaattataaaagatgtcggcgtcttggactggcgctttaaacaa
ttcggcatatggcccgagattgaagggaaagaaattctggttctgctctcggattctgga
aagctttctcttctttacttttcttgtcagatgcataggtttattgcaattggaaatatt
gaactatccaaaccaggaaatatgagggatcagctgggaagaattttggctatagatcat
gactctgcttggattgccatcagtgcgtacgaggatgcgtttgcttttgtgcatgttgga
aagagtccccatgtctatggtccaaatagagaaatcgtagagagggcaaacatcatgcac
gttgtatataagaccagtgatatccgcggtacggtttggagcatgtgcttcatgaggact
cgctgttcgatggatgaatattaccctgttgtggccatgataattaataggaagggctct
gatgtgaatgaattgtcagtgtatgcactagctgccaacgatggtggcatccagcaccta
tctagtttctcagaacctggacctttggcgcttgacatctcagaaattcctcagctggat
ggctttgcacttctatttcgtgctggtgatattctatttgtggatcttagggaaccgaaa
gacatctgctgtaccattaggataagcataacaggcagtctgattggagggcagatcagt
gttgaagattcctgtcgaggattagatgttgatgacgatgttgctgcttgtgctttgcta
gaactgagagactctggaaataacataatgatggatgacaattacatggctattgatggt
gttgataatgcaggtagcatgaaatcaaggattatttgctcatggagctgggagccagat
gcagtgcgaggacgaccgaggctgatcttttgcttggatgacggagaatttcatacgctg
gaatttaattgggatgttgaaggagtgaaggtattgcctgagcgtgtccatagggggttg
ccttgtagacctcttttatggttgaacagaggaatgatagcagggtttgtagagatggga
gatggaatgattcttcaacttgaacatggaagactggtgcacaaaagtgcagttcagaat
gtaggacctatattagatttagcaattgctgactaccatggtgagaagcaggatcaaatg
ttttcatgttgcggaatgtgcccggagggatcactgcgtgttatacgcaatggtatcaat
gtggagaaacttctgaggaccgaacctatttatcagggtgttactggtttgtggacattg
agaatgaagagaactgatacatatcactcttttcttatattagcatttgttgaggaaaca
agagtactatcagtaggactgagctttaatgacatcagtgatgctgttggatttcagcct
gatgtttgcactttggcgtgtggtttaatagctgatggtttgcttgtgcaaattcacagc
aaaggtgtaaagctttgtttgcctacaacatatgctcaccctgagggcgctcccttaagt
tccccagtttcttttgtctggtatcctgatgtcactatcagtgttggtgctgttggacag
aatatggttgctgttgctacatcaaatccttgttgcctttatattctcagggtcagatca
ttatcttcatttcagtatgagttgtatgagacacagcatgtccaattgcaatatgaagtt
tcttgcatatccatcccggaagaggactcgaaacttagaactgtatcttctgcagtgggt
ggtggtgatgttaggaagagaaaagggaataatcttgctgctaaagttgatgtccgcatg
tttgctgtcattggaactcataaaccttctgtggaggttgtctcactggaaccggaagaa
gcatttaggctactctctattgggtctatatcagtaaacaatgcgtttggtgctcctatc
agtggctgtatacctgaaaatgttcggtttgtagcatctgagaggttctacattctggca
ggtctaagaaatggcatgctactcaggtttgagtcagacacgagcaaagaccattatttc
cctggttccttttacaaggattcttttacaccttgtgttaatacaccccttcagttgatt
gccatacgccatattggaattaccccggttggcttggtagcattgcgtgattcagctaat
gctgacattattgttctcagtgataggtcttggctattacacgctagtaggcacagcttg
gcatattcatccatctcatttctgcctgcgtcccatgtgactccggtatcttccgcggat
tgccccagtggtctgctgttcgttgcagagaactgtttgcatttggttgagatggttcat
ggcaaaagattaaatgcacagaagttttcaattggagggactccaaggaaagtgctatac
cacagcgatagtagaacactgttggttatgagaactggtttaactggtgcatcgtgttct
tcagatattgtccaaatagatccaaataatggcaccttgctttccagattcaagtgtgaa
cctggtgaaactgcaagatgcatccagattgcgaaaataggaagtgagcaagtgttaatt
gttgggacaagtaaatctaatgaccatccaatgatgccaaatggcgaagcagaaagcagc
atcaagggacgcctaattgttctaagcttggatactcttggaagtcctcgtgagagcagt
tcatttattccaacttctaatttgagttcctcttctcacacgggctcattccctgaaatt
gttggatacgcaactgaagaattgtctagcaacagcatgtgcagcagtccggatgatgtt
tgctacaaccaaattcaacttgaacagatgacaggacatttgagatcactgactcatgtt
acctttgctggtgcagttcttgctgtatatccatatctagatcgatatgtgttggcagca
gctggtaatacgctttgtgtattttgttttgtgaatgaaaatcctcatcgtatgaaaaag
tacgccgtgagtagaacacgatttacaattacttgtttgaagacgtacgcgtcacggatt
gcagtgggtgattgtcgtgatggtcttctcttctattcttataacgagagtcttaggaag
ttggaacttatttacgctgatcctgctcaacgattggttggtgatgttgctcttttaaac
tgtgaaactgctgtggtatcagatcgatgcgggagcatatctgtattatcctgcccaaga
cttgaagtttctgaaagtccagaaaagaacttagctgtacactgctcattttttatggga
gaaattgctatgagcatccagaaggctgcatttaggtaccggcttccaattgataatgag
acagacccggtgttggagtcggcttataactgtgttgtggcaagtactatgctggggagt
gtttttgttctgattccactcacaagtgaggagcaccatctgttgcaagatgtccaagaa
agactctccgttcaccagttgactgctccactcttgggaaatgatcatgcagagtttcgt
cgacgtggtatcccgtcgggagtaccttcaattctggatggtgacatgctcgtacaattc
ttggagctcaccagtgaacaacaacaaactattcttgatgctgcgccttcaggaaaggga
ccacccaggtctatctcaattttccaggtcatgagaacattggagagggtccactatgcg
ctgaactga
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integrated database retrieval system
