Lolium rigidum (rigid ryegrass): 124681041
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Entry
124681041 CDS
T09103
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04120
Ubiquitin mediated proteolysis
lrd04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
124681041
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
124681041
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124681041
Enzymes [BR:
lrd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124681041
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124681041
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
124681041
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
EIF3I
Beta-prop_HPS5
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
zf-C3HC4
WD40_like
WD40_RFWD3
zf-C3HC4_3
Beta-prop_WDR75_1st
zf-C3HC4_4
zf-RING_2
Beta-prop_DCAF12
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
eIF2A
Beta-prop_IFT140_1st
zf-RING_UBOX
U-box
zf-RING_5
zf-RING_10
zf-rbx1
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
124681041
NCBI-ProteinID:
XP_047071967
LinkDB
All DBs
Position
Unknown
AA seq
696 aa
AA seq
DB search
MGDSSVAAGALVPAGPKPDPAPSTGGDAPQVQPQAQHHPASPAEDAGAAEASPSSSSPEE
GAGEAAPDRELLCPICMALIKDAFLTACGHSFCYMCIVTHLTHKSDCPCCSNYLTKAQLY
PNFLLDKVLKKMSARQVAKTASPIDQLRHVVQQGNDMSVKELDSLMTLIAEKKRQMEQQE
SETNMQILLVFLHCLRKQKLDELNEIQTDLQYIKDDISSVERHRLDLYRTKERYSMKLRM
LLDEPAASKMWPSPMDRPSSPFLPNSRAPLNASSPGGLNNRKHDLRGQVSQQGYQRRDAL
VCPDPPNPPIQSGNVIARKRRVQAQFNELQEYYLQRRRTGGQSRRQDDIVAMNREGYHEG
LEDFQSVLTTFTRYSRLRVIAELRHGDLFHTANIVSSIEFDRDDELFATAGVSKRIKVFE
FSTVVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNIIASSDYEGIVTVWDVQTRQSVMEY
EEHEKRAWSVDFSRTEPSMLVSGSDDCKVKVWCTKQEASAINIDMKANICSVKYNPGSSY
FVAVGSADHHIHYFDLRNPSAPLHVFGGHKKAVSYVKFLSNNELASASTDSTLRLWDVKD
NCPVRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPASSHRFVSSDLDDAE
EDPGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAP
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgggcgactcctcggtggccgccggcgcgctggtgccggcggggcccaagccggacccg
gcgccgtccaccggcggggacgccccccaggtccaaccccaggcgcagcaccacccggcg
tcgccggcggaggacgcgggggcggcggaggcgtcgccctcctcgtcgtcgccggaggag
ggggcgggcgaggccgcgcccgacagggagctgctgtgcccgatctgcatggcgctcatc
aaggacgccttcctcaccgcctgcggccacagcttctgctacatgtgcatcgtcacgcac
ctcacgcacaagagcgactgcccatgctgcagcaactacctcaccaaggcgcagctctac
ccaaacttcctgctagacaaggtcttgaagaaaatgtcggcccggcaagttgcaaaaaca
gcatctcccattgatcaacttcgacatgttgtgcaacagggaaacgatatgtcggttaaa
gagctagacagcctcatgactttgattgctgagaagaagaggcaaatggaacaacaagag
tcagagacaaatatgcaaatattgctagtattcttgcactgccttagaaagcaaaagctg
gatgagttgaatgagattcaaactgatctgcagtacatcaaagatgatataagcagcgtg
gagagacatagattagatttgtatcgaacaaaagaaaggtactccatgaagctgcgcatg
cttttggatgaacctgctgcatcaaagatgtggccctcgcctatggacagacctagcagt
ccctttctccccaattcccgggcaccacttaatgcatcatctccagggggtttaaataat
aggaaacatgatttgagaggtcaagtaagccagcaaggatatcaaagaagagatgccctt
gtttgcccagaccctcctaatccccctatacagtcgggtaacgtaattgctcggaagagg
cgagttcaagcacagttcaacgagcttcaagaatactatctgcaaagacggcgtaccgga
ggacagtcacgcaggcaggatgacattgttgcaatgaatagagaaggttatcatgaaggt
cttgaagatttccagtctgtgctaacaacattcactcgatacagtcgcttacgtgtaata
gcagaactgagacatggagatcttttccacactgcaaacattgtatccagtatcgaattt
gatcgtgatgatgagctattcgctactgctggagtgtcgaagcgtattaaagtcttcgaa
ttttctacagttgttaacgagccatcagatgttcactgtccagttgttgaaatggctacc
agatctaaactcagctgccttagctggaacaagtactcaaaaaatattatagcaagcagt
gattatgagggcatagttactgtttgggatgttcaaacccgccagagtgtgatggagtac
gaagagcatgagaaaagagcatggagtgttgatttttcgcgtacagagccctcaatgctc
gtatctgggagtgatgattgcaaggtcaaagtgtggtgcacaaaacaggaagcaagtgcc
attaacattgatatgaaggcaaatatttgctccgttaaatataatcctggatcgagctac
tttgtcgccgtcggatctgctgatcaccatattcattatttcgatttgcgaaatccaagt
gcgcctctccatgtttttggtgggcataagaaagccgtttcgtatgtgaagttcttatct
aacaatgagcttgcatctgcatcaaccgatagcacgttacggttatgggatgtcaaggac
aattgcccagtaaggacgttcagagggcacaaaaatgagaagaactttgttgggctatcg
gtaaataatgagtatattgcatgtgggagtgaaacaaatgaggtttttgtttaccacaag
gctatctcaaaacctgcttccagccataggtttgtatcctccgacctggatgacgccgaa
gaagatcctgggtcttatttcattagcgctgtctgctggaagagcgatagccctactatg
ctaactgccaacagccaggggaccattaaagttctcgtgcttgctccttga
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