Lolium rigidum (rigid ryegrass): 124681456
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Entry
124681456 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12-like
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124681456
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124681456
03036 Chromosome and associated proteins [BR:
lrd03036
]
124681456
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124681456
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
124681456
mRNA degradation factors
5'-3' decay
Decapping complex
124681456
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Gene silencing
piRNA pathway
124681456
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
EPL1
Motif
Other DBs
NCBI-GeneID:
124681456
NCBI-ProteinID:
XP_047072330
LinkDB
All DBs
Position
Unknown
AA seq
529 aa
AA seq
DB search
MHHPRARYPPGYDYGGAGAGGGRGGNGGGGGGNGGGGGGGNQNYYGGRNPHPQHHDYHHQ
QQQHGQRNSFPQQQQYQQRNSLSQQQQQQQQQQQQHQQWLRRDQAAAQASGESAARAAPR
LDAVDTSSQDWKAQLNIPAPDTRFRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSP
IQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTS
QVCKELGKYLNIEVMVSTGGTSLKDDIMRLYQPVHLLAGTPGRILDLTKKGICMLNECSM
LIMDEADKLLAPEFQPSVEQLIRYLPASRQLLLFSATFPVTVKDFKQKYLPRPYVINLMD
ELTLKGISQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCF
YIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTAETYLHRV
GRSGRFGHLGLAVNLITYEDRFNMYRIEQELGTEIKTIPPQIDLAEYCQ
NT seq
1590 nt
NT seq
+upstream
nt +downstream
nt
atgcaccacccgagggcgcggtacccacccggctacgactacggcggcgccggcgccgga
ggcggccgtggaggtaacggcggcggcggtggaggtaacggcggtgggggtggcggcgga
aaccaaaactattatggtggccgaaacccgcacccgcagcaccatgattaccaccaccag
cagcagcagcacgggcagaggaattcgttcccgcaacagcagcagtaccagcagaggaat
tcgctctcgcagcagcagcaacaacagcagcagcagcagcagcagcatcagcagtggctg
cggcgggaccaggccgcggcccaggcatcaggagagtccgcggcaagggcagcgccgcgg
ctcgacgccgtggacacgagctctcaagattggaaggcacagctgaatattccagctcca
gatactcgtttcaggacagaggatgttactgcaacaaaaggcaacgagtttgaagattat
tttttgaagcgcgaactactgatgggaatatatgagaagggatttgaaaggccatctcct
attcaagaagagagcattccaattgctcttactggaagtgatattcttgcaagagcgaaa
aacggcactggcaagactgctgcattttgcattccagcacttgaaaaaattgacccagag
aaaaatgccatacaagttgttatattggtaccaacaagggaactagccctgcagacttca
caagtttgcaaagagcttgggaagtacctgaatattgaagttatggtgagtactggagga
accagcttgaaggacgacattatgcgtttgtaccaacctgttcatttacttgctgggaca
cctggacggatactggaccttaccaagaaggggatttgtatgctgaacgagtgttcaatg
ctcattatggacgaggcagacaagctgttggctcctgagtttcagccttccgtggaacaa
cttattcgctaccttccagctagtcggcaactattgctgttttctgcaacctttcctgta
actgtcaaggatttcaagcagaaatatctgcctaggccttatgttattaatctgatggat
gaactaacactgaaaggaatttcacaatactatgcttttgtagaagaaaggcaaaaagtt
cattgtctgaacacacttttctcaaagcttcaaataaaccagtctattatattctgcaac
tctgttaatagagttgagctactggctaagaaaatcactgagcttggctattcgtgcttc
tacattcatgctaaaatgttgcaagaccatcgaaaccgagtgtttcatgattttcgcaat
ggtgcttgcagaaacctcgtgtgcacagatctctttaccagaggaattgacatccaagct
gttaatgttgtcattaattttgacttccccaagactgctgaaacatatttgcatagggtt
ggacgttctgggagatttgggcacctcggcttggcagtgaacttaatcacttatgaggac
cgcttcaacatgtataggattgagcaagaacttggcacagaaataaaaacaatacctcca
cagattgacctggcagaatattgccaatga
DBGET
integrated database retrieval system
