KEGG   Lolium rigidum (rigid ryegrass): 124681502
Entry
124681502         CDS       T09103                                 
Name
(RefSeq) THO complex subunit 5A
  KO
K13174  THO complex subunit 5
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03013  Nucleocytoplasmic transport
lrd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124681502
  09122 Translation
   03013 Nucleocytoplasmic transport
    124681502
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:lrd03019]
    124681502
   03041 Spliceosome [BR:lrd03041]
    124681502
Messenger RNA biogenesis [BR:lrd03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     124681502
Spliceosome [BR:lrd03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    124681502
SSDB
Motif
Pfam: FmiP_Thoc5
Other DBs
NCBI-GeneID: 124681502
NCBI-ProteinID: XP_047072368
LinkDB
Position
Unknown
AA seq 788 aa
MAAASAMDVEAPARAPSTTTKPNRRSPHDLLAETRASVEEVAARILAIKKDGAPKSDLNE
LVAQMSLLLITLRQVNREILMEEDRVKGETEAAKAPVDSTTLRLHNLLYEKNHYVKAIRS
CLDFQTKHPGIELVPQEEFHRAAPADIRDKTLAADAAHDLMLKRLNFELVQRKELCERHD
KLEQQKSILMGTIATQKKFLSSLPSHLKSLKKASLPVQQQLGMLHTKKLKQHHAAELLPS
PLYITYTQLLGQKEAFGENIEVEISGSTKDAQTFAQQQAKEANGTLSNDDNNRMDDDAID
DEEDAQRRRSRSRKTSKEANNPALAYQLHPLKVVLHVYDTEVSGTKRRKLITLKFEYLAK
LNVVCVGSENSEGVDSNILCNLFPDDTGLELPHQMAKLYAGEAPNFSEKESRPYKWVQHL
AGIDFLPEAPLSAGESNRAARSADLSSGLALYRQQNRAQTILQRIRSRKVAQMSLTWQLN
YLTKLKWPQIEHQNTPWASRTPLCNLHSWSLTGFFPEPSACSALMVSEPAGSVDSDTERR
SVTNWQETEGIAEDGELPLVVAAEHNPSGSIMSHSEVSPEVRNHSRGLSLITKSATPSKL
SISHSFGRNEDDLDFLMDSDTELEELTCDQETVQGTITIDKSWEDYASREFTMVLSKTLK
NGPKVMLEAKIKISIEYPLRPPLFRLQLISENTVALKWHNDLRAMEAEVNLHILRDLSVS
CEDYMLTHQVMCLAMLFDMHFDEDNEKRKVTSVIDVGLCKPVSGTMLTRSVRGRDRRHTI
YWRGADCS
NT seq 2367 nt   +upstreamnt  +downstreamnt
atggcggcggcttccgccatggacgtcgaggcgccggcgcgtgcgcccagcaccaccacc
aaaccgaatcgccgctctccccacgacctcctcgccgagacccgcgcctccgtcgaggag
gtcgccgcgcggatcctcgccatcaagaaggacggcgcgcccaagtccgacctcaacgag
ctcgtcgcgcagatgtcgctcctcctcatcacgctccgccaggtgaacagggagatactg
atggaggaggacagggtgaagggcgagacggaggcggccaaggcgcccgtggactccacc
acgctgaggctgcacaacctgctctacgagaagaaccactacgtcaaggccattaggtcg
tgcctcgacttccagaccaagcaccccgggattgagctcgtgccccaggaggagttccac
cgcgccgcgcctgctgacatccgtgacaagacactcgcggctgacgccgcccacgacctc
atgctcaagcgcctcaactttgagctcgtgcagcgtaaagagctatgtgagcggcatgat
aaattggaacaacagaagagcatcttgatggggacaattgcaactcagaagaaattcctt
tcaagcctcccgtcgcatttaaaatcactgaagaaagcatcattgccagtgcagcagcag
ctgggcatgctgcataccaagaaactgaagcagcaccatgcagctgagttgctcccgtct
cctctgtatataacctatacccagttattaggacagaaagaagcatttggagagaatatt
gaagtggagataagtggaagcacaaaggatgctcaaacttttgctcaacagcaagccaag
gaggcaaatggcactttatcaaatgatgataataatcggatggatgatgatgcaattgat
gatgaagaagatgctcagagaagaagatcaaggtccaggaagacttcgaaggaagctaat
aatcctgcgttggcatatcaacttcatccacttaaagttgttctccatgtatatgatact
gaagtttctggaaccaagcgtcgtaagctaataaccctgaagtttgaatatttggcaaag
ttgaatgttgtctgtgttggatccgaaaactcggagggggtggacagcaatattctgtgc
aacctgtttccagatgacactggtttagagctgcctcatcagatggctaagctttacgct
ggggaggctccaaattttagtgaaaaggagtcacgtccatacaagtgggtacagcatcta
gctggtatagatttcctgccagaagctcctttatctgccggggaatctaacagagcagcg
agaagtgctgatttgtcatctgggcttgcactataccgccagcagaatcgtgcacagact
attttgcagagaattcgctctcggaaagttgcccaaatgtctctcacgtggcaacttaat
tatttaactaagctgaagtggcctcaaatagaacaccagaatacaccgtgggcatcacgc
accccattgtgtaatctgcatagttggtcattgacagggttttttcctgagccatcggct
tgttctgctttaatggtgagtgagcctgcaggaagtgttgacagtgatacggagagaaga
tctgtgacaaactggcaagaaactgagggtatcgcagaggatggggaacttccgcttgtg
gttgctgctgaacataacccaagtggttccataatgtcgcactcagaggtgtcacctgaa
gttcgaaaccattctagaggcttatcccttataacaaagagcgccacgccatctaagcta
agcatctcacacagttttgggagaaatgaggatgatcttgatttcttaatggacagtgat
actgagttggaggaactgacatgtgaccaagaaactgtacaaggtactataactatcgac
aaatcctgggaggactatgcttccagggagttcacgatggttttgagtaaaactttgaag
aatggtccaaaagtcatgctggaggccaagattaaaattagcatagaatatcctcttagg
ccaccccttttcagattacagctgatttctgaaaacaccgtggctttaaaatggcacaat
gatctccgtgcaatggaagctgaggtgaatcttcacatcctccgagacttgtctgtgtca
tgtgaggactacatgttaacccaccaagttatgtgccttgctatgttatttgatatgcac
tttgacgaggataacgagaaaagaaaagtgacttcagtgattgatgttgggctttgcaaa
cccgtaagtggaactatgctcactagatcagtcaggggaagagaccgcagacacaccatc
tactggcgaggtgctgattgctcttag

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