Lolium rigidum (rigid ryegrass): 124681618
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Entry
124681618 CDS
T09103
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124681618
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124681618
03016 Transfer RNA biogenesis [BR:
lrd03016
]
124681618
Enzymes [BR:
lrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
124681618
Messenger RNA biogenesis [BR:
lrd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
124681618
Transfer RNA biogenesis [BR:
lrd03016
]
Prokaryotic type
tRNA degradation factors
124681618
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
OB_RRP5_4th
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
124681618
NCBI-ProteinID:
XP_047072450
LinkDB
All DBs
Position
Unknown
AA seq
907 aa
AA seq
DB search
MLASPATLRHLLLPAPPHLAFGTPNPAPPLHAWLPISRLAPPRVAHASSRRPRRRDARAR
AVAAAGEEAAAPAEEASSSGPTKFSVKIPVGDRHILVETGQIGRQASASVMVTDGETIVY
CSVCMADTPSDPSDFFPMSVHYQERLSAAGRTSGGFFKREGRAKDHEVLVCRLIDRPLRP
TMPKGFYYETQILSWVFSYDGIHSPDCMAVTAAGIAMALSEVPNKQTIAGVRIGMINDQF
VVNPTTEQMEDSELDLMMAGTDSAILMIEGFCDFLTEEKLLQAVETGQEAIREICKAIDV
LVKTCGKKKMVEAINLPPPELYRHVEDISGDELVKALQIKQKIPRRKTLSALEEKVITIL
SEQGYVSKDESSGPIENLADIVEEEDEDEIIEDGEVDEGDVHIKPVSRKPHRQLFSEVDV
KLVFKEVSSKYLRRRIVEGGKRSDGRSPCELRPINSQCRLLPRAHGSALFTRGETQALAV
VTLGDYQMAQRIDTLVDTEESKSFYLQYTFPPSSVGEVGRTGAPNRREIGHGMLAERALE
PILPSEKDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAMGLVLDT
QEFGGDGTPLILSDITGSEDASGDMDFKVAGNEHGISAFQMDIKVVGITLAVMEQALRQA
RDGRKHILNEMSKCSPPPAKALSPYAPVIHIMKVKPNKVSLIIGSGGRTIKSIIEETGVY
GIDARDDGTVKITARDIESLEKSKTIIANLTMVPKVGEIFRNCEIKTIAPYGAFVEIAPG
REGLCHISELSSSWLAKAEDAYKVGDRIDVKLIEINDKGQLRLSCKALLPDANQEPGSNK
QQASGPTKEKIVYKDDIIKVTTRRSRRKKEGEPSAAENATSKTLENSTAENAEGFGFTRQ
LDGKETG
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgagccccgccacgctccgccacctcctcctcccggcgccgccgcacctcgcc
ttcggcaccccgaaccccgcgccgccgctccacgcgtggctccccatctcccgcctcgcg
ccgccgcgcgtcgcgcatgcctcctcgcgccgaccgcgacggagggatgccagggctagg
gctgtcgctgctgcaggagaggaggcggccgcgccagcggaggaggccagcagctccggc
ccgaccaagttctccgtgaagattcccgtcggcgaccgccacatattggtagagacgggc
cagattgggaggcaagcgagcgcgtctgtaatggtcactgatggagaaacaattgtctac
tgttctgtttgtatggctgatactccaagcgacccttctgattttttcccaatgtcagtt
cactatcaggagcgcctttcagctgctggaagaactagtggcggtttctttaaacgagaa
ggaagggcaaaagaccacgaggttttagtatgcagattgatagacaggcctctacgtcct
actatgcccaaggggttctattacgaaactcagattctatcctgggttttcagttatgat
ggtattcattcccctgattgcatggctgtgacagctgctggtatagccatggcactctct
gaagttccaaataaacaaacaattgctggcgtaagaattggtatgattaacgaccagttt
gttgttaacccaaccactgaacaaatggaggactcggagttggacttgatgatggctggg
accgatagtgctatattgatgatagagggattctgtgattttctcactgaggagaagctg
cttcaagccgtggaaacaggacaggaggcaattcgagaaatctgcaaggcaattgatgtt
cttgtcaagacctgtgggaagaagaaaatggttgaggctatcaatttaccaccccctgaa
ctctacaggcatgttgaagatatctctggagacgagttagtgaaggcattgcaaataaaa
caaaaaattcctcgaagaaaaactctttcagcactggaggagaaagtaataactatattg
tcagaacaaggctatgtgtccaaagatgagtcatctggacccattgaaaatttagctgat
attgttgaggaggaagatgaggacgaaattatagaggatggtgaagtggatgaaggtgat
gttcacatcaagccagtgtcaaggaagccccaccgtcagttattctcagaagttgatgtc
aagctagtcttcaaggaagtgtcatccaaatatttgcgaaggcggattgtagagggtgga
aagcgaagtgatggacggagtccttgtgagcttcggcctattaattctcaatgtagatta
cttccacgggcacatggcagtgcactgttcacaaggggagaaacacaggcactggccgtg
gtcactttaggtgactatcagatggctcaaagaattgatacccttgttgacactgaggaa
tcaaaaagtttctatcttcagtacacattcccgccatcatctgttggtgaagttggtcga
actggagcacctaataggagagagataggtcatggtatgcttgcagaaagggcgctggaa
ccgattttaccttcagaaaaggattttccatacaccattcgtgtggagagtactatcact
gaaagtaatggctcatctagcatggcttctgtctgtggaggttgtttagcacttcaagat
gctggtgttccaataaagttccctgtagctggaatagcaatgggcttggttcttgacact
caggaattcggtggagacggtacaccacttattctttctgatattactggatctgaagat
gcctctggtgacatggatttcaaggttgccggtaatgaacatggtatttctgctttccaa
atggacatcaaggtggtgggaataactctagctgtaatggaacaagcacttcgtcaagct
agagatggtagaaagcatattctaaatgaaatgtcaaaatgttcacccccaccagctaaa
gcactgtctccctatgctcccgtaatacatattatgaaggtcaaacctaacaaggtgagt
ttaataattggttctggcggaaggacaataaaaagcataattgaggagactggagtatat
ggtattgatgcccgagatgatggcacggtaaaaattactgcaagggacatagaaagctta
gagaagtcaaaaactataatagctaatcttaccatggttccaaaagttggagaaattttc
aggaactgtgagatcaaaacaattgctccctacggagcttttgtggaaattgcacctggg
cgtgagggtttatgtcatatcagcgagttaagttcgagttggttggccaaggctgaggat
gcttataaagttggagatcgtattgatgtcaagctcattgagataaatgacaagggtcaa
cttcgactaagttgcaaagccttgcttcctgatgcaaaccaagaaccaggcagcaacaag
cagcaagcgagcggtccgacgaaagaaaagatagtgtacaaagatgatatcattaaggtg
accacaagaagatccagacgcaagaaagaaggtgagccgtctgcagctgaaaatgccaca
tcaaagacccttgaaaacagcacagccgaaaatgccgaaggatttggtttcacaagacag
ctagatggtaaagaaacagggtga
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