Lolium rigidum (rigid ryegrass): 124682190
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Entry
124682190 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24-like isoform X1
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124682190
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124682190
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124682190
Spliceosome [BR:
lrd03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124682190
Complex B
124682190
Complex C
U2 SnRNP specific factors
124682190
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124682190
NCBI-ProteinID:
XP_047072884
LinkDB
All DBs
Position
Unknown
AA seq
760 aa
AA seq
DB search
MSKRPRLEGFSIPRPTSYSFERSQPAPRLYVPADDDLDDIAFSDDAAAPSDAAGGGKPED
DEIDPLDAFMAEIQEEIRAPPPPPKPEALRRADSDEDDDPMESYLRAKKDAGLTLAADVM
NAGYNSDEEVYAAAKAVDAGMMEYDSDDNPIVVADKRKIEPIPPLDHSTIEYEPFNKDFY
EEKPSVSGMSPEEVADYMKSLSIRVSGFDVPRPVRNFEDCGFPVQLMNAIAKQAYEKPTT
IQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPIGVICAPTREL
AHQIYLEAKKFAKPYNLQVAAVYGGVSKFDQFKELKAGCEIVVATPGRLIDLLKMKALKM
FRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILSDPIR
VTVGQVGSANEDIKQLVNVLPSDVEKMPWLVEKMPGMIDDGDVLVFAAKKARVDEVENQL
NQRGFKVAALHGDKDQASRMETLQKFKSGIYHVLVATDVAARGLDIKSIKTVVNFDIAKE
MDMHIHRIGRTGRAGDKDGIAYTLITQKETRFAGELVHSLIAAGQDVPNELMDLAMKDGR
FRSNRDSRKGGKKGGKGKGSGGGGGSGSGGGGARGRGRGIRGVDFGLGIGYGDSGPQVPA
PRSATVNTLKTGMMQNFKSSFVSASSSAPSNSAPSRGAAPFVKPALRGFVSGGTIGGGPP
APSFVPAARPAGNSNENGNSNPERSKEQRRERKRPSGWDH
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagcgcccgaggctcgagggcttcagcatcccgcgccccacctcctacagcttc
gagcgctcccagcccgccccgcggctctacgtgcccgccgatgacgacctcgacgacatc
gccttctcggacgacgccgccgcgccctcagacgccgcgggtggcgggaagccggaggac
gacgagatcgacccgctcgacgcgttcatggcggagatccaggaggagatccgcgcgccg
cccccgccgcccaagcccgaggcgctccgccgcgcggactccgacgaggacgacgacccc
atggagagctacctgcgtgccaagaaggacgccgggctcacgcttgccgccgacgttatg
aacgccgggtacaactccgacgaggaggtgtatgctgccgccaaggccgtcgacgccggc
atgatggagtacgactcggacgacaaccccatagtagtagcggacaagaggaagatagag
cccataccgccgctagaccattcgaccatcgagtacgagcctttcaacaaggatttctat
gaggagaagccgtcagtttcagggatgagtccggaagaggtggctgattatatgaaaagt
ttgtcaattcgggtttcaggctttgatgtgccaaggccagttagaaactttgaggattgt
gggtttcctgtgcaactgatgaatgctattgcgaagcaagcctatgaaaagccgaccaca
attcagtgccaggctttacctattgtactatcagggagagatatcattggtattgcaaaa
actggttcagggaaaactgcagcatttgttctccctatgattgttcatattatggatcag
cctgagcttcagaaggaagaaggtccaataggcgtcatctgtgctccaacaagagaattg
gcgcatcaaatatacctcgaagctaagaagtttgcaaagccttacaaccttcaagtagct
gctgtttatggtggtgtttctaaatttgatcagtttaaagaactgaaagcaggctgtgaa
atagttgttgctaccccagggagactgatagacttgcttaagatgaaggcattgaagatg
tttagggcaacttatctggttcttgatgaagctgatcgcatgtttgatcttggatttgag
ccacagatccggtccattgttggtcaaattagaccagaccgacaaaccttgcttttctct
gcaaccatgccatacaaagtggaacgtttggctagagaaattttgagtgaccctattcga
gtcacagttggtcaagttgggagtgctaatgaagatatcaaacaacttgttaatgtactc
ccttctgatgttgagaagatgccgtggcttgtcgagaaaatgcctgggatgattgatgat
ggagatgttcttgtatttgcagctaaaaaggctagagtcgatgaggttgagaaccagttg
aatcagcgaggattcaaagttgcagcacttcacggtgacaaggatcaagcttctcggatg
gagacattgcagaagttcaagtctgggatttaccatgttcttgttgcaactgatgttgct
gcacgtggtctggacataaagtcaatcaaaacagttgtcaactttgatattgcaaaagaa
atggatatgcatattcaccgcattggaagaactggccgcgctggtgataaagatggcatc
gcatatactctaatcacacagaaagaaacacgatttgcaggcgaactggttcatagttta
attgctgctggtcaagatgtgcccaatgaacttatggatctggcaatgaaggatgggagg
ttcagatcaaaccgcgactccagaaaaggtggaaagaaaggtggcaaaggaaaaggtagt
ggaggcggtggtggaagtggaagtggtggtggtggtgcacgtgggcgcggccgtggcata
cgtggagttgattttggccttggcattggctacggtgattccgggccacaagtacctgcc
ccaagatctgccactgtaaatacgctgaagacaggaatgatgcaaaatttcaagagtagc
tttgtctcagcgtcttcgagtgcgccaagcaacagcgcaccttcgaggggtgcagctccc
tttgtaaagccggcactccgtggttttgtttctggtggcaccataggaggaggacccccg
gcgccctcatttgtccccgcagctagacctgcaggaaacagtaacgaaaatgggaactca
aaccctgagcgctcgaaggagcaacgaagggagagaaagcggccgtcaggatgggatcac
taa
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