Lolium rigidum (rigid ryegrass): 124682500
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Entry
124682500 CDS
T09103
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124682500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124682500
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
124682500
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124682500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
124682500
NCBI-ProteinID:
XP_047073129
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All DBs
Position
1:complement(142949845..142954568)
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AA seq
599 aa
AA seq
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MAATRAAAASAKQVTRKNFPESLRELAAHMKECDYVAVAALKTGAPTGWRRALPVDTAET
AYLKAKFAAESFQPLHIAVCPFRVDATSRSTVVAYPYNFHLFPRDELHVGMPSYSFSCQS
SYLSSMARDGFDFNMCIYDGISYLSRVQESLARQKIVIPHLRQPSPSPSTSVADSIFTTR
IKSRIQHWRKGYAEPSKTADDSLVNSLRKLILGGESYGSRPSMSVDVCSDRQVQLVLEII
GHTFDDLVPLVVPDKSGVARAVRVIFTSSAEDKNLLLMDIRKLEDEHSFKFRGFREVVDL
LSSSQKPIISYNCLSDLTMIHTKFIGPLPPNMHEFMCSLRMVFSSVVDIGHLWREIGPLR
KAKNIQAALSYLQRQYFVPMEIEIPQQDGTNSVTKGGENVLRITKLFAKLSKLLNISPKC
QSQSGEQCYSVEDYCNIFYPGCMAEESDDVDSTNESDTTRTVSTDCVLFLWGFSGISAKE
LRSRLTRLHHVFSKDFELRLLDKTCSALIFRSSDAAAGLLRDISSESPSLNDFFSEGLKA
AGFDVYRKACRSGLWDSDLAEALESASSEPATSTLSGHGSSEIYWSSSLKLDLKEYLEC
NT seq
1800 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacgcgcgccgccgccgcgtcagcgaagcaggtgaccaggaagaacttccca
gagtctctgcgagagctggcggctcacatgaaggagtgcgactatgtggccgtcgcggcg
ctcaagacgggcgcccccaccgggtggcggcgcgcgctgcccgtggacaccgcagagacg
gcgtacctcaaggccaaattcgccgcggagtccttccagcctctccacatcgcggtttgc
ccattccgcgtggacgccacctcccgctccaccgtcgtcgcctacccgtacaacttccat
ttgtttcccagagacgagctacatgttggaatgccttcttatagtttctcctgccaatca
tcatacttatcatctatggcccgtgatggttttgatttcaatatgtgcatttatgatggc
atctcttacctatcaagggtgcaagaatccttggccaggcaaaagatcgttatcccccat
cttcgtcagccatctccatcaccaagtacatcggttgcagattcaatttttacaactaga
atcaagtcgagaattcagcattggcgtaaaggatacgcagaaccaagcaaaacagctgat
gattctttagttaattcccttaggaaactaattttgggtggtgaatcatatggttcaagg
cccagtatgagcgtcgatgtctgcagtgatcgccaagttcaactggttttggagataata
ggtcacacctttgatgaccttgtacctcttgtcgttccggataaatctggcgttgctagg
gcagtgcgtgtcatctttactagttctgcagaggataaaaatcttctcctgatggacatc
agaaaattggaggatgaacatagtttcaagtttcgtggatttcgagaagttgttgatcta
ctatcgtcatcacagaaaccaatcatatcatacaattgcttgagtgaccttacaatgata
cacaccaaatttattgggcctcttccgccaaacatgcatgaatttatgtgttccttgagg
atggttttctctagtgttgttgatataggccatttgtggcgagaaatcggccctttgaga
aaagcgaagaatatacaagcagctctgagttacttacaaagacagtactttgtgccaatg
gaaatagaaataccacagcaagatggtaccaatagtgtcacaaaaggtggagaaaatgtt
ctgagaataacaaaattatttgctaagttaagtaaattacttaatatcagtcccaagtgt
caatctcaatctggtgagcagtgttactcagttgaagattactgtaacatcttttatccc
ggctgcatggccgaagaatctgatgatgttgactccactaacgagtcagataccacaagg
acagtgagcactgattgcgttcttttcttgtgggggtttagtgggatatctgccaaagaa
ttgaggtcccgccttacaagattgcaccatgtcttctcgaaagattttgagcttagattg
ctggacaagacatgctcagctttgatatttcgtagctctgatgctgcagcgggattactg
agagacataagctcagaaagcccatcgctaaatgatttcttctcagagggtctgaaagcc
gcaggtttcgatgtctacaggaaggcttgcaggtcagggctttgggattcagatttagcc
gaggccctggagagtgcttcatcggagccagctacttcgacgctttctggtcatggtagc
tctgagatatactggagtagctcattgaagctagatctaaaggagtatctggagtgctag
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