Lolium rigidum (rigid ryegrass): 124682641
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Entry
124682641 CDS
T09103
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04120
Ubiquitin mediated proteolysis
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124682641
04120 Ubiquitin mediated proteolysis
124682641
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
lrd04121
]
124682641
Enzymes [BR:
lrd01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
124682641
Ubiquitin system [BR:
lrd04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
124682641
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
124682641
NCBI-ProteinID:
XP_047073272
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Position
1:complement(78325900..78329724)
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AA seq
489 aa
AA seq
DB search
MIRLRTYAALSLLATTTAVYHALSTRGQFYPAMAHLAASKPCLVLLLNAGLVAMCAAWQL
VRRAFLGPLREAEAERLNEQAWREAVEVLFAVTIFRQEFSLAFLVMVAALLLVKALHWLA
HKRVEYIETTPSVPLLSHARIVSFMAFLLVVDCIFLWNSLGSLIHKREASVAIFFSFEYM
ILATSTISTFVKYVFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRISDYVRYRKITSNMNERFPDATTDELTASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPIVPPDNGRAASSAQQHGAQPAAGTGTST
SGGAPSENVNMRQAKLEAAASAASVYGRSFAYPPASTLNRHSGPMHAAPSTSQSGEASSS
TGHPLEPQAFYSHGPVGSTASSRDPENALQKAYEKAIRSQIEVLQIQLQMVQQRATTPAA
TNNASAEHA
NT seq
1470 nt
NT seq
+upstream
nt +downstream
nt
atgatccggctacggacctacgcggcgctgagcctgctggcgacgacgacggccgtgtac
cacgccttgagcacgcggggccagttctacccggcgatggcccacctcgcggcctccaag
ccctgcctcgtgctgctcctcaacgcgggcctcgtcgccatgtgcgccgcctggcagctg
gtccgccgcgccttcctcggcccgctccgggaggccgaggccgagcggctcaacgagcag
gcctggcgggaggccgtcgaggtgctcttcgccgtcaccatcttccgccaggagttctcc
ctcgccttcctcgtcatggtcgccgcgctgctcctcgtcaaggcgctgcactggctcgcg
cacaagcgggtcgagtacatcgagaccacgccctcggtgcccctgctctcgcacgccagg
atcgtatccttcatggccttccttcttgttgtcgactgcatcttcctgtggaactcgctc
ggctcgctcattcacaagcgggaggcatctgttgcgatcttcttttcctttgagtatatg
atactggcaacatccacaatatcgacattcgtaaagtatgtattctatgtcagcgacatg
ctaatggaaggtcaatgggagaaaaaggcagtgtatacgttttatttggagcttatcagt
gaccttgtgcacttgtctttatatatgctcttcttcatagcaatcttcctgaactacgga
gtcccactgcacttgatccgtgagctctatgagacctttcgcaacttcagaatccgcata
tcagattatgtacgctacagaaagataacttccaacatgaatgagcgatttccagatgcc
acaacagatgaactcactgcgagcgatgccacatgtattatttgccgtgaagagatgacc
acagcaaagaagttgctttgcgggcacttgttccatgtacattgtcttaggtcatggcta
gagcgccaacatacttgccccacatgtagagctccaattgtccctccggacaatggacgt
gcagcatcatcagcacagcaacatggagctcaacctgctgcaggcactggtacttcaact
tcgggaggagcaccaagtgagaacgtgaacatgcgccaagcaaaacttgaggctgctgcg
tcagctgcttctgtgtatgggagatcatttgcttatcctccagcaagcactttgaataga
cattcaggacctatgcatgctgcaccaagtacttcacaatcaggagaagcaagtagttcc
actggccatcctttagaacctcaggctttttattcacatggtccagttggttctacagca
agcagcagggaccctgaaaatgctctacaaaaggcatatgaaaaagctatcaggagccag
atagaggtgttgcaaattcaattgcaaatggtgcagcaaagggctacaacaccagcggca
actaacaatgcgagtgctgaacatgcctga
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