Lolium rigidum (rigid ryegrass): 124683407
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Entry
124683407 CDS
T09103
Name
(RefSeq) THO complex subunit 4D-like isoform X1
KO
K12881
THO complex subunit 4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03013
Nucleocytoplasmic transport
lrd03015
mRNA surveillance pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124683407
09122 Translation
03013 Nucleocytoplasmic transport
124683407
03015 mRNA surveillance pathway
124683407
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124683407
03041 Spliceosome [BR:
lrd03041
]
124683407
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124683407
TREX complex
124683407
Spliceosome [BR:
lrd03041
]
Complex C
Other components
EJC/TREX
124683407
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124683407
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
RRM_11
Motif
Other DBs
NCBI-GeneID:
124683407
NCBI-ProteinID:
XP_047073880
LinkDB
All DBs
Position
1:153376960..153383232
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AA seq
274 aa
AA seq
DB search
MSFYARRGGDRGSDRFQGGGGRGGHVMRGRSGLPPRGPLGINARPSARIIAKSFSRTKDM
TWRPDLFSDSMAASGIETGTKLYISNLDYRVSNEDIKELFSEVGHLKRFAVHFDGYGRQN
GTAEVVFTRRSDAVAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVVGASNGRPTRT
VVMTPEAGRRGGGSSNRPLSNPTNRFNRGAFQTGRGRGRGRTSFQAPFQTQFQGRGRGRG
QLRGRGRGRKQAEKTADELDKDLESYHAESMKTD
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgtcattttatgcaagaaggggtggagacaggggtagtgaccgttttcaaggaggaggt
gggcgaggtggacatgtcatgcgaggaagatcaggccttcctcctcgaggaccacttggg
attaacgcccgaccatctgcacgcattattgctaagtcttttagccgaaccaaagacatg
acctggagacctgatctgttcagtgacagtatggcggctagtggaatagaaactggtaca
aagttgtacatttcaaacttggactatcgtgtttccaatgaggatataaaggagctgttt
tcagaagttggtcacttgaaacgatttgctgttcactttgatggttatggtcgccaaaat
ggtacagctgaggtggtgtttacaaggaggagtgatgcagttgctgcattgaaacgttat
aataatgttctacttgatggaaaagctatgaagattgaagttattggaagtgacttaggt
ttgcctatgacacctcgtataaatgttgtcggggcttctaatggcagacctaccagaaca
gttgttatgacgcctgaagcgggtcgacgtggtggaggttccagcaacaggcctttgagt
aatcccaccaacagatttaatcgtggtgctttccaaactggccgaggccgaggcaggggc
cgtacttcgttccaggccccgttccagacccagttccagggccgaggcaggggccgtggt
caattgcggggccgcggccggggaaggaagcaagcagagaagactgcagatgaattggac
aaagacctggaatcctatcatgccgagtcgatgaagaccgactga
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