Lolium rigidum (rigid ryegrass): 124683714
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Entry
124683714 CDS
T09103
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
124683714
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124683714
03009 Ribosome biogenesis [BR:
lrd03009
]
124683714
04131 Membrane trafficking [BR:
lrd04131
]
124683714
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
lrd04147
]
124683714
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
124683714
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
124683714
Membrane trafficking [BR:
lrd04131
]
SNARE
SNARE associated proteins
Others
124683714
Autophagy
Aggrephagy
Other aggrephagy associated proteins
124683714
Exosome [BR:
lrd04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
124683714
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_5
AAA_33
AAA_14
CDC48_2
AAA_22
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
Mg_chelatase
AAA_28
Parvo_NS1
ABC_tran
AAA_18
ATPase_2
IstB_IS21
AAA_7
AAA_24
Viral_helicase1
NB-ARC
TsaE
Zeta_toxin
NACHT
Vps4_C
DUF815
ResIII
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
124683714
NCBI-ProteinID:
XP_047074132
LinkDB
All DBs
Position
1:272370190..272372550
Genome browser
AA seq
786 aa
AA seq
DB search
MESASSSKKAANRLVVEEATTDDNSICNLHPATMDELSIFKGDLVLLKGKRRRATVCIVI
PDDTCEEHKLRINKVARSNLRVRIADVVSVHLCPDAKYGRRVHVLPVDDTVEGITGNLFE
AYLKPYFADAYRPVHKGDLFLVRGGMRSVEFKVIEIDPASDNYCIVAGDTEIFCDGEPVK
REDEERLDGIGYDDVGGMRKQMNQIRELVELPLRHPQIFKSLGVKPPKGILLYGPPGSGK
TLIARAVANETGAFFFCINGPEIMSKMAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAP
KREKTHGEVERRIVSQLLTLMDGMKARAHVIVMGATNRPNSIDPALRRFGRFDREIDIGV
PDEVGRLEVLRIHTKNMKLSEDVNLEVVAKDTHGYVGADLAALCTEAALQCIREKMDVID
LEDDTIDAEILNSMSVTNDHLKTALVGTNPSALRETVVEVPNVSWSDIGGLDGVKRELQE
TVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMW
FGESEANVREIFDKARQSAPCVLFFDELDSIAMQRGGSVGDAGGAADRVLNQLLTEMDGM
NAKKTVFIIGATNRPDIIDSALLRPGRLDQLIYIPLPDEASRHQIFKACLRKSPVAKDVD
LGALARFTTGFSGADITEICQRACKYAIREDIEKDIERQRSGMEVDGGQEDEVAEIKAAH
FEESMKYARRSVSDGDIRKYQSFAQTLQQSRGFGTEFRFPVQPQASEVSPNAFDTSVAAD
EDDLYN
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atggagagcgcgtcgtcgtcgaagaaggcggcgaaccggctggtggtggaggaggcgacc
acggacgacaactccatctgcaacctccacccggccaccatggacgagctctccatcttc
aagggcgacctcgtgctgctcaagggcaagcgtcgccgcgccaccgtctgcatcgtcatc
cccgacgacacctgcgaggagcacaagctcaggatcaacaaggtggcccgctccaacctc
agggtacgcatcgccgacgtcgtgtccgtgcacctctgccccgacgccaagtacggtagg
cgcgtgcacgtcctccccgtcgacgacaccgtcgagggcatcacgggcaacctgttcgag
gcctacctcaagccctacttcgcggacgcctaccgcccggtgcacaagggcgacctcttc
ctcgtgcgcggcggcatgcggagcgttgagttcaaggtcatcgagatcgaccctgccagc
gacaactactgcatcgtggcgggagacacggagatcttctgcgacggcgagccggtgaag
agggaggacgaggagcggctcgacggcatcggctatgacgacgtgggcggcatgcgcaag
cagatgaaccagatcagggagctggtcgagctgccgctcaggcacccgcagattttcaag
tctctcggcgtgaagcctcccaagggcatcctcttgtacggccctcccggctccggcaag
acgctgatcgctcgtgccgtggccaacgagacgggagccttcttcttctgcatcaatggc
cccgagatcatgtccaagatggccggcgagagcgagagcaacttgaggaaggccttcgaa
gaggccgagaagaacgcgccgtccatcatcttcattgatgagatcgactccattgctcca
aagagggagaagacacacggcgaggtggagaggcgcattgtgtcccagctgctgacgctc
atggacgggatgaaggcgcgagcgcacgtcatcgtcatgggcgccacgaaccgccccaac
agtatcgaccctgctctcaggcgcttcgggaggttcgaccgcgagatcgacattggcgtg
ccggacgaggtcgggcgccttgaggttctacgcatccacaccaaaaacatgaagctctct
gaggacgttaacctggaggtggtcgccaaggacactcacgggtatgttggcgctgacttg
gccgcactctgcaccgaagcggcgctgcaatgtattagggagaagatggacgtgattgat
cttgaggacgacacaatcgacgccgagatcttgaactccatgtctgtcaccaacgaccac
ctcaagactgctcttgtcggcacgaacccttcggcgcttcgcgagaccgtcgtggaggtg
cccaacgtcagctggagcgacatcggcggtctcgacggcgtcaagagggagctgcaggag
actgtgcagtacccggtggagcaccccgagaagtttgagaagttcggcatgtcgccttcc
aagggcgtcctcttctacgggccaccaggctgcggcaagacgctactggccaaggcgatc
gccaacgagtgtcaagccaacttcatcagcatcaaggggcccgagctgctcaccatgtgg
ttcggcgagagcgaggccaacgtccgtgagatcttcgacaaggcgaggcagtcggcgccg
tgcgtgctcttcttcgacgagctcgactcgatcgcgatgcagcgcggcggcagcgtggga
gacgccggcggtgcagccgacagggtcctgaaccagctgctgacggagatggacggcatg
aacgccaagaagacagtgttcatcatcggcgccaccaacaggccggacatcatcgactcg
gcgttgctccgtcccggccgcctcgaccagctcatatacatccccttgccggacgaggcc
tcgcgacaccagatcttcaaggcttgcctcaggaagtctcccgtggccaaggacgtcgac
ctcggtgcactcgcgaggttcacgacaggtttcagtggcgccgacatcacagagatttgc
cagagggcgtgcaaatatgccatcagggaagacattgagaaggacatcgagaggcagagg
tcaggcatggaggtggacggcgggcaggaagatgaagtggctgagatcaaggcagctcac
ttcgaggagtcgatgaagtacgcgaggaggagtgtgagcgacggcgacatcaggaagtac
cagtcgtttgctcagacgctgcagcagtccaggggcttcggcaccgagttccgcttcccg
gtgcagccacaagcgtcagaagtttctcccaatgcctttgacacctcggtggcagccgat
gaggatgatctctacaactaa
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