Lolium rigidum (rigid ryegrass): 124683924
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Entry
124683924 CDS
T09103
Name
(RefSeq) exopolygalacturonase-like
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd00040
Pentose and glucuronate interconversions
lrd01100
Metabolic pathways
Module
lrd_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
124683924
Enzymes [BR:
lrd01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
124683924
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Gene cluster
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Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Beta_helix
Motif
Other DBs
NCBI-GeneID:
124683924
NCBI-ProteinID:
XP_047074296
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Position
1:291554395..291555902
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AA seq
404 aa
AA seq
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MAFPLAALFFLVTARWCLQVAHAGRQVFDVMDFGAIADGETDDSKAFLRTWTKACASPGR
PSVVVPKGEYRLHPVVFRGPCKGYMELRLSGVLRAPDDLAAFRGSHEWINFANVDGLLVT
GGGTFDGRGASSWHLNECPRNPNCTPLPVSIKLGRVRNVTITGVTSLDSKFFHVIIIGSQ
DVAIHRVTIRAPRDSPNTDGVHIQASSNVRITDTAVATGDDCVSVGPGSADITVSGVSCG
PGHGISVGSLGRRPGEQDVRGLRVSNCTFAGTANGVRIKTWRGGVRPGSVVSGLVFEDIV
MRKVRNPIIIDQDYCPYSSISCRHESAQLPSVVKISDVKFKNIRGVSATQVAVKLSCSGA
NPCHGLELRDIDLSYVKRSVATESRCANVAGGIAGGTLVPPSCI
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcgtttccccttgccgctctgttttttctggtcacggctaggtggtgcctgcaggtc
gctcatgccggccgccaggtgttcgacgtcatggacttcggcgcgatcgccgacggtgag
acggatgactccaaggcttttctacggacgtggaccaaggcctgcgcgtcgccggggagg
ccgtccgtggtggttcccaagggcgagtaccggcttcacccggtggtcttccgcggcccg
tgcaagggctacatggagctgcgcctctccggcgtcctccgcgcgccggacgacctggcc
gcgttccgcggcagccacgagtggatcaacttcgccaacgtcgacgggctgctcgtcacc
ggcggcggcacgttcgacggccgcggcgcctcgtcgtggcacctcaacgagtgccccagg
aatccgaactgcacgcccctccccgtctcgatcaagctggggcgcgtgaggaacgtgacg
atcacgggggtgacgtcgctggacagcaagttcttccacgtgatcatcatcggcagccag
gacgtggccatccaccgcgtcaccatccgggcgccgcgggacagccccaacacggacggc
gtccacatccaggcctcctccaacgtgcgcataaccgacaccgccgtcgccaccggggac
gactgcgtctccgtcggccccggcagcgccgacatcaccgtgtccggggtctcctgcggc
ccgggccacggcatcagcgtcggcagcctcgggaggcgcccgggggaacaggacgtgcgc
ggcctgcgcgtgtccaactgcaccttcgccggcacggccaacggcgtgcggatcaagacc
tggcgcggcggcgtccgcccgggctccgttgtgtccgggctcgtcttcgaggacatcgtc
atgaggaaggttcgcaaccccatcatcatcgaccaggattactgcccctacagctccatc
tcctgccgccatgaatcggcgcagctgccgtccgtggtcaagataagcgacgtcaagttc
aagaacatcaggggcgtgtcggccacgcaggtcgccgtgaagctgtcctgcagcggcgcg
aacccatgccatggcctagagctcagggacatcgaccttagttacgtcaagcgtagcgtc
gccaccgagtcgcggtgcgcgaatgtcgccggtggtatcgccggagggacgcttgtacct
ccctcgtgtatatga
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