Lolium rigidum (rigid ryegrass): 124684360
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Entry
124684360 CDS
T09103
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
KO
K12857
Prp8 binding protein
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124684360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124684360
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124684360
Complex C
U5 SnRNP specific factors
124684360
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
Beta-prop_EML_2
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
WD40_RFWD3
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_WDR35_TULP_N
Beta-prop_SCAP
Beta-prop_DCAF4
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
eIF2A
Beta-prop_DCAF12
Beta-prop_Nup120_160
Beta-prop_RIG_1st
Beta-prop_HPS5
Ge1_WD40
Beta-prop_IP5PC_F
WD_LRWD1
Motif
Other DBs
NCBI-GeneID:
124684360
NCBI-ProteinID:
XP_047074644
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All DBs
Position
1:329366119..329368583
Genome browser
AA seq
346 aa
AA seq
DB search
MFSAPGNNSLALAAPRPGMELGNVQQHPNQVFGLGPGGKQRSSSLEAPIMLLSGHQSAVY
CMKFNPAGTVIASGSHDKDIFLWYVHGDCKNYMVLRGHKNAILDLQWTTDGTQIISASPD
KTLRVWDVETGKQVKKMAEHSSFVNSCCPSRKWPPLVVSGSDDGTAKLWDLRQRGAIQTL
PDKYQITAVSFSEAADKVFTGGLDNDVKWWDLRKNEVTETLKGHQDMITGMQLSPDGSYL
LTNAMDNELKIWDLRPYAPENRNIKTLTGHQHNFEKTLLKCSWSPDNRKVTAGSADRMVY
IWDTTSRRILYKLPGHNGSVNETAFHPTEPIIGSCGSDKQIYLGEL
NT seq
1041 nt
NT seq
+upstream
nt +downstream
nt
atgttttccgctccgggcaacaattctttggccctagcagccccgcggccaggaatggag
ctgggtaacgttcaacaacatcctaaccaggtttttggtcttggacctggtgggaaacag
cgctcatccagtctggaggcgccaataatgctactgtcaggccaccagagtgctgtctac
tgcatgaagttcaaccctgctggaactgtgatagcatcaggatcccatgacaaggatatc
ttcttgtggtatgtccatggagactgtaagaactacatggtactgagagggcacaagaat
gctatccttgaccttcagtggaccactgatggtacccagataatctctgcaagccctgac
aagactttgagggtgtgggatgttgaaacaggcaagcaggttaagaagatggctgagcac
tcatcgtttgtcaactcatgttgcccgtcacgcaagtggccacctcttgttgtgagcgga
tcggacgatggtacagcgaagctatgggacctgcgccagagaggggctatccaaacactt
ccagacaagtaccaaattactgcggtgagcttctcagaggctgcagataaggttttcact
ggtggcctggacaacgacgtcaagtggtgggatcttcgcaagaatgaagtcacggaaact
ctcaaaggacatcaggacatgataactggaatgcagctcagtcctgatgggtcgtacctc
ctgaccaatgcgatggacaatgagctgaaaatctgggatctgcgcccttatgcaccagag
aaccggaacatcaagacccttacaggccaccagcacaactttgagaagactctgttgaag
tgcagctggtcacctgacaatcgcaaggtcactgctggtagtgctgaccgcatggtctac
atctgggacacaacatcgaggcggattctgtacaagcttcccggccacaacggttctgtc
aatgagactgctttccaccccaccgagcctatcattggatcctgcggcagcgacaagcag
atttatcttggggagctttag
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