KEGG   Lolium rigidum (rigid ryegrass): 124684523
Entry
124684523         CDS       T09103                                 
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
  KO
K12857  Prp8 binding protein
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124684523
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lrd03041]
    124684523
Spliceosome [BR:lrd03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    124684523
 Complex C
   U5 SnRNP specific factors
    124684523
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_WDHD1_1st WDR55 EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_WDR75_1st WD40_MABP1-WDR62_2nd Beta-prop_TEP1_C Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_SPT8 NBCH_WD40 Beta-prop_IFT122_1st Beta-prop_RIG_2nd WD40_RFWD3 ANAPC4_WD40 WDR90_beta-prop_4th Beta-prop_WDR35_TULP_N Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_WDR19_1st eIF2A Beta-prop_DCAF12 Beta-prop_Nup120_160 Beta-prop_RIG_1st Beta-prop_HPS5 Ge1_WD40 Beta-prop_IP5PC_F WD_LRWD1
Other DBs
NCBI-GeneID: 124684523
NCBI-ProteinID: XP_047074773
LinkDB
Position
1:complement(345671899..345674521)
AA seq 346 aa
MFSAPGNNSLALAAARPGMELGNVQQHPNQVFGLGPGGKQRSSSLEAPIMLLSGHQSAVY
CMKFNPAGTVIASGSHDKDIFLWYVHGDCKNYMVLRGHKNAILDLQWTTDGTQIISASPD
KTLRVWDVETGKQVKKMAEHSSFVNSCCPSRKWPPLVVSGSDDGTAKLWDLRQRGAIQTL
PDKYQITAVSFSEAADKVFTGGLDNDVKWWDLRKNEVTETLKGHQDMITGMQLSPDGSYL
LTNAMDNELKIWDLRPYAPENRNIKTLTGHQHNFEKTLLKCSWSPDNRKVTAGSADRMVY
IWDTTSRRILYKLPGHNGSVNETAFHPTEPIIGSCGSDKQIYLGEL
NT seq 1041 nt   +upstreamnt  +downstreamnt
atgttttccgctccaggcaacaattctttggccctagcagccgcgcggccaggaatggag
ctgggtaacgttcaacagcatccgaatcaggtttttggtcttggacctggtgggaaacaa
cggtcatccagtctggaggcgccaataatgctactgtcaggccaccagagtgctgtctac
tgcatgaagttcaaccctgctggaactgtgatagcatcgggatcccatgacaaggatatc
ttcttgtggtatgtccatggagactgtaagaactacatggtactgagagggcacaagaat
gctatccttgaccttcagtggaccactgatggtacccagataatctctgcaagccctgac
aagactttgagggtgtgggatgttgaaacaggcaagcaggttaagaagatggctgagcac
tcatcgtttgtcaactcatgttgcccgtcacgcaagtggccacctcttgttgtgagcgga
tcggatgatggtacagcgaagctatgggacctgcgtcagagaggggctatccaaacactt
ccagataagtaccagattactgcggtgagcttctcagaggccgcggataaggttttcact
ggtggcctggacaatgacgtcaagtggtgggatcttcgcaagaatgaagtcacggaaact
ctcaaagggcatcaggacatgataactggaatgcagctcagtcctgatgggtcgtacctc
ctgaccaatgcgatggacaatgagctgaaaatctgggatctgcgcccttatgcaccagag
aaccggaacatcaagacccttacaggccatcagcacaactttgagaagaccctgttgaag
tgtagctggtcacctgacaatcgcaaggtcactgccgggagtgctgaccgcatggtctac
atttgggacacaacatcgaggcggatcctgtacaagcttcctgggcacaacggttctgtc
aacgagactgctttccaccccaccgagcctatcattggatcttgtggcagcgacaagcag
atttatctcggggagctttag

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