Lolium rigidum (rigid ryegrass): 124684663
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Entry
124684663 CDS
T09103
Name
(RefSeq) pre-mRNA-processing factor 39-2-like isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124684663
Spliceosome [BR:
lrd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
124684663
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
HAT_Syf1_CNRKL1_N
Motif
Other DBs
NCBI-GeneID:
124684663
NCBI-ProteinID:
XP_047074892
LinkDB
All DBs
Position
1:complement(169493833..169505771)
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AA seq
1172 aa
AA seq
DB search
MPETVDMEAEPEAAAALVALGFEPSPSRLDNFKNSLHLLSNGNTRDFDAWVSLISSAEET
SANDIEVISLVYRSFLLEFPLCHGYWIKYAAHKARLCTYEDVVEVYEQAVQAVPHSVDLW
VSYCGFGMSVYEDPALIRSLFERGLSLVGKDYFCYHLWDKYIEFENSQKQLIQLATMYIN
MLKFPTKKLHKYYESFKKLVKSLEQEVTHCGAEISTENIHMSEVMEAEESEGDISTKIAG
LFDQGGHLKPEALKQYLFAGDRLYRISSKLNEEICGFEASIRRPFFHVKPLDDDQLENWN
QYLDFVEKNGDFDWAVKLYERCLIPCANYSEFWIRYSEYVDAKGGREIANYALGRASSSF
VKGVPTFSMYYAMFKEQVGDAPGARALFAKGSSNFTSDFYTNINRMANMEKRMGNTKAAT
EIYENAIEDAMQKHNTEVLPDLYANFAQFKYAASHSIAEAQEVFVKGIEQAPCKPLIKGF
IQFMSTYGGSTEIPLLDSLISNAVTPGSDVSTALSPEDREDISLLFLKFVDLYGDVQELR
KAWARHSKLFPHNTRNLSQQCCITDSDKRRIAEFLLVAHDHTPEGTTRLKQSSKSDTWLI
DKNVGSQVDMDAADPGKRQGVANEQKIVGTVDAHLEVGDTAQKFVDMAHSQHSLEKHVTH
SQMDSHADQKTIDDLSVCEQIEPTTKAHASVSERAPQAESCNYDSPSQSIADAQINAQVD
VKTIQLSAIDHSETVCSRSDSPSGASLPEEGIPSDTTQIIPALEENQHEKIQVKLETEYD
VSVSNAKPEKSTDSPEATQYDREVQTQVLSVCAKSSSSEMATTQTTTGSQFSSDNAVTAQ
VSVQHQMDNPQAYESSNLCLTGQNMQQMQQQGLAYAIPQNVQTSPQTQAQLVAQPNQGNQ
QYLQMMQGYASQMWQYYQQQLYYLQAQHNQQMQSLQQQQLPTEHLQQSFAQQVQQLNQQM
VLWQQQVQQQQQQAQPVQQQSDKAQVQQYHPSPGDGKHEQNKHLPQESQIDHQNQQSQQQ
QLLYFQQQQQVYFMQQQQQVYQQQQQQQQQLMQQQQYLSQMPQQKQDVVQQQQLFQQQQQ
QLYEQQQKELVVLQQQQQQFAQQQMQQYLQQQAKQQGFRDQNGEPNPQDTRKMQMEHGQQ
SEASQSDGSKLRGGDQSELSYPSTPQSQRSNY
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgccggagacggtggacatggaggcggagccggaggctgcggccgcgctcgtcgccttg
gggtttgagccctctccgtcgaggctcgataatttcaagaacagccttcatttgctgagc
aacggaaacacgagggatttcgatgcttgggtatcgttaataagttccgcagaggaaact
tctgctaatgacatagaggttattagcttggtctaccgtagcttcttattggaatttcct
ttgtgccacggctactggattaaatacgcagctcacaaagcacggttatgcacatatgaa
gatgtggtggaggtttatgagcaagccgtgcaagcagtgcctcattccgtcgatctttgg
gtcagttactgtggatttggtatgagtgtgtatgaagaccctgctcttattagaagctta
ttcgagaggggtttgtcgcttgttggaaaggactacttctgttaccatctttgggataag
tacatagagtttgagaattctcagaagcagctgattcagcttgctaccatgtatattaac
atgctgaaatttcctacaaagaagctgcacaagtattatgagagttttaagaagttggta
aaatcactggaacaagaggttacacattgtggtgctgaaatatctacagaaaatatacat
atgtctgaagtgatggaagctgaggaatctgaaggggatatctcgaccaaaattgctggc
ttatttgaccaaggtgggcatcttaagcctgaagcattaaagcagtacttatttgctggc
gatcgtctctaccggatatccagtaaacttaatgaagaaatttgcggctttgaggcctcc
atcagaaggcctttttttcatgtcaagccacttgatgatgaccagcttgaaaactggaac
cagtatcttgattttgttgagaagaatggcgattttgactgggctgtaaaactgtatgag
aggtgcttaatcccttgtgctaattattcagagttttggattcgctactctgagtatgta
gatgccaaaggtggccgagagattgcaaactatgctcttggtcgggcatcttcgagtttt
gtgaagggagtccccactttcagcatgtactatgctatgttcaaagagcaagttggtgat
gcaccaggtgctcgtgctctttttgctaaaggaagcagtaatttcacttcagatttctat
actaatatcaatagaatggccaacatggagaaacgcatgggaaatactaaagcagctacg
gaaatatatgagaatgcaattgaggatgccatgcaaaagcacaacactgaagtacttccg
gacttgtacgcaaattttgcgcagttcaaatatgcggcaagtcatagcattgctgaagct
caagaagtctttgtcaagggaatcgaacaggcaccctgtaaacctctgattaagggattc
atacagttcatgagtacatatggaggatctacagaaatacctcttcttgattctcttatt
tctaatgccgtgactcctggatctgatgtatcaacagctttaagccctgaagatcgagaa
gatatctcgttgttgtttttgaagtttgttgacctgtatggggatgttcaagaactcaga
aaggcatgggctaggcacagcaaactttttcctcataacacaagaaacctgtcgcagcag
tgttgtataactgatagtgacaagaggagaatagctgaatttctgttagttgctcatgac
catactccagaaggtacgaccagattgaaacagtcatccaaaagtgacacttggctaatt
gataaaaatgttggttcacaagtggacatggatgctgcagatccagggaaaagacaggga
gttgccaatgagcagaaaatagttgggactgttgatgcgcacctggaggttggcgataca
gctcagaaattcgttgacatggctcacagtcagcatagcttggagaaacatgtaacacac
agccaaatggattcacatgctgaccaaaaaacaattgatgatttaagcgtatgtgaacaa
attgagccgacaacaaaagcccatgcttctgtaagtgagagagcccctcaagctgaatca
tgtaattatgattctccttcacaatcaattgctgacgcgcagattaatgcacaggttgat
gttaagaccattcagctatctgcaattgatcattcagaaacagtatgctcaagatccgat
tcgccatctggggcaagcttacccgaagaaggaattccttccgatacaactcaaataatt
ccagcgttagaggaaaatcaacatgagaaaatccaagtaaagctggaaacagagtatgat
gtgtctgtcagtaatgcaaagccagagaagtccacggatagtccagaagcaactcaatat
gatagggaagttcagacacaagttctgtctgtctgcgcaaaatcttccagctcagaaatg
gcaacaacacaaactaccacaggttctcaattttcttccgacaatgcagtgactgcccaa
gtttcagttcagcaccagatggataatcctcaagcttacgaatctagtaacctttgtttg
actgggcaaaacatgcagcagatgcagcagcaaggtcttgcttatgcaattcctcagaat
gttcaaacatccccacaaactcaagctcaactcgttgcacaacctaatcagggaaaccaa
cagtacctccaaatgatgcaagggtatgcatcccagatgtggcaatattaccagcaacag
ctgtattacctgcaggctcagcataatcagcagatgcagagtttgcaacagcagcagctt
ccaactgagcatctccagcaaagttttgctcagcaggtacaacaactgaaccaacaaatg
gtactttggcagcaacaggtccagcagcagcagcaacaggcacaaccagttcagcaacaa
tctgacaaagcgcaggttcagcagtatcacccttctccaggggatggtaagcatgaacaa
aataaacatctgccgcaagaatctcaaatcgatcatcaaaatcagcaatcacagcagcag
caactgctctatttccagcagcagcagcaggtgtactttatgcagcagcagcagcaggtg
taccaacagcaacaacagcagcagcagcagctaatgcagcaacaacagtatctatctcag
atgccgcagcaaaaacaagatgtggtacaacagcagcagctatttcagcagcaacagcag
cagctttatgagcaacaacagaaggagttggtagttctgcagcaacagcagcaacagttt
gcccaacaacagatgcagcagtacctgcaacagcaagcaaaacaacaagggttcagagat
cagaacggtgagccaaatccgcaggacacaaggaagatgcagatggagcatggtcaacaa
tctgaagcctcacagagtgatggttccaaattgcggggtggtgatcaatctgagttgtcc
tacccatcaactccacagtctcagcgttccaattattga
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integrated database retrieval system
