Lolium rigidum (rigid ryegrass): 124684922
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Entry
124684922 CDS
T09103
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124684922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124684922
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
124684922
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
124684922
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
124684922
NCBI-ProteinID:
XP_047075139
LinkDB
All DBs
Position
1:complement(170636555..170647285)
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AA seq
621 aa
AA seq
DB search
MSGLLNSNLNSSASNLPDSTGRPFAASFSGQSGSVQGFHHSGLHNIHGNFNLPNMPGSLA
QRNAAMSGLPSSGVQQTGGSISGRFASNNLPGAMSQIPHAHSGVGGRGMNVGGGQAYSSG
MNIGGTIQGLSSNLGNSVNRNSVPGMSASPALGNLGPRITSSVGNIVGGSNIGRNMSSGG
LSVPSIASRMNFGGNTGSGSLNVQGSNRMMTGLLPQGSSQLISMIGSSYPTSGGSLSQNQ
MQGGNNSLGSLGMLHDHGDNAPFDINDFPQLTGRPSSAGGPQGQYGSLRKQGVGVNTIVQ
QNQEFSIQNEDFPALPGFKGSSSEYAMELHHKEQLHENVPVMQAQQYPMARSVGFNLGSS
HPPNRQQHQLGGNSIQSAGPQNIGLRPLNSSQASSLGSYEQLLQQYQQPQTQRPFRLQQM
SSGTQSHRDQSLKVIQGGQTPPDPYGLLGLLGVIRMHDADLTSLALGIDLTTLGLNLNSA
DNLYKTFGSPWSNEPAKGDPDFQNPACYLAEQPPPLTPLHFQKFQTLILFYIFYSMPKDE
AQICAAIELYNRGWFYHRELRLWFTRIPNMEPLVKTPDYERGSYGCFDPHNWETVRKDNF
VLHYELVEKKPSPPSAYQIVR
NT seq
1866 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggcttgctgaactcaaatcttaacagttcagcatcaaatcttccggactcaaca
ggacgaccatttgcagcatccttttctggccaatctggatcagttcaaggtttccatcac
tctggtctgcacaacattcatggaaatttcaatcttccaaatatgcctggttcgcttgct
caaaggaatgctgcaatgagtggcctaccatcctctggggttcagcaaactggagggagc
atttcagggagatttgcttcgaacaaccttccaggtgccatgtctcagattcctcatgca
cattcaggtgtcggtggtagaggaatgaatgttggtggaggtcaagcatatagtagtggc
atgaatattggtggtaccattcaaggcttatcctcaaacttgggcaacagtgtcaatcgg
aattctgttcctggcatgtccgcgtctccagctttaggaaacttgggtccacgtattaca
agttctgtgggaaacattgtgggcgggagtaacattggaagaaatatgagctctggtggg
ttgtcggtgccgagtattgcgtcacgcatgaattttggtggcaatactgggagtggaagt
ctaaatgtgcaaggatccaacaggatgatgactggccttcttccgcaaggatcatctcaa
ctgattagtatgattggaagttcatatccaacgtctggaggttcattatcccagaaccaa
atgcaaggaggtaataattctctaggttctttggggatgctacatgaccatggtgacaat
gctccattcgacatcaatgattttccccagttgactggccgacctagttctgctggtggg
ccgcaaggacaatatggatcactacggaagcaaggagttggtgttaacactattgttcaa
caaaaccaggaattcagtattcaaaatgaagatttcccggctttgccaggatttaaaggt
agcagttcagagtatgctatggagttacatcacaaggaacaacttcatgagaatgtacct
gtaatgcaagcacaacaatatccaatggcaaggtcagttggttttaatttaggaagtagc
cacccaccaaatcgtcagcagcatcagctgggtggtaattcaattcagagtgctggaccc
caaaacattggactaagaccactaaactctagtcaagcttctagtttgggatcatatgag
caactgctccagcagtaccagcagccgcagacccaaaggcctttcaggttgcagcagatg
tcttcaggcacccagtcacacagggatcaaagtctaaaggtcattcagggaggccagaca
ccacctgatccatatggcttgttaggattgttgggagttataaggatgcatgatgctgac
ttgacatctcttgctttaggaatagatttaacaacattgggtttaaatttgaactcagca
gacaatctgtacaagacatttggctccccatggtcaaatgagccagcaaaaggagatcct
gattttcagaatccagcttgttacttggctgagcaacccccaccactcactcctttgcat
tttcagaagtttcagacactcatactgttctacatattctatagcatgccaaaggacgaa
gctcagatatgtgctgccatcgaactatataaccgtggatggttttaccatagagaactg
cggctgtggttcacaagaattcctaacatggaacctcttgtcaagactcctgattatgaa
cggggttcttatggttgctttgatccacacaattgggagacagtccgtaaggataacttt
gttctccattatgagctagtagagaaaaagccaagtcccccttctgcataccaaatcgtt
aggtga
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