Lolium rigidum (rigid ryegrass): 124684954
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Entry
124684954 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124684954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124684954
03041 Spliceosome [BR:
lrd03041
]
124684954
03009 Ribosome biogenesis [BR:
lrd03009
]
124684954
03016 Transfer RNA biogenesis [BR:
lrd03016
]
124684954
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124684954
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
124684954
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
124684954
Complex C
U4/U6.U5 tri-SnRNP related factors
124684954
Ribosome biogenesis [BR:
lrd03009
]
Eukaryotic type
Pre-60S particles
Helicases
124684954
Transfer RNA biogenesis [BR:
lrd03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
124684954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
HHH_8
THP2
SPESP1
Motif
Other DBs
NCBI-GeneID:
124684954
NCBI-ProteinID:
XP_047075170
LinkDB
All DBs
Position
1:14529655..14537563
Genome browser
AA seq
998 aa
AA seq
DB search
METLKRKAPDAPATDADSPLKAPRADSTTPAPAPAAPSERVACVHDVSYPEGYDASTSGS
RIVAGGGEGAAPAKTFPFPLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLR
NQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGS
EVMREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVH
KQPCHIVYTDYRPTPLQHYVFPAGGDGLYLVVDENGKFREDSFQKSLNVLAPASGGDKKR
DNGKRQKGVMAGKPHEDSDIFKMVKMIIQRQYDPVILFSFSKKECEFLAMQMAKMDLNGE
DEKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQEG
LIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQRGI
CILMVDEKMEPSTAKMMLKGGADSLNSAFHLSYNMLLNQMRSEDGDPEKLLRHSFYQFQA
DRALPDLEKQVGELEKERSSMIIENEENVKDYYDLLQQYKSLKMDVRDIVLSPKYVLPFL
QSGRLVRVQYSTDDKHTFSIDENVTWGIIINFEKVKTNGEDRRPEDYDYTVDVLTRCSVN
KDISGKKIMKIIPLKSHGEPVVISLPLSQIDGLSSVRMYIPKDLLPVEARENTLRKVEEV
LSRFSKDGVPLLDPEEDMEVKSSSYRKAARRIEALESLLEKHDDIRSAPHIQQKLKVFHA
KQEIASKIKSIKKTIRASTALAFKDELKARKRVLRRLGYITSEDVVEVKGKVACEISSAD
ELTLTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVAN
LQLECKIQIDVESFVNSFRPDVMEAVYSWARGSKFHQIMEMTQVFEGSLIRAIRRLEEVL
QQLILASQSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atggagacactcaagcggaaggcgccggacgcccccgccaccgatgcggactcccctctc
aaggcgccgcgggccgactccaccacgccggcccccgcccctgccgccccatccgagcgc
gtcgcctgcgtgcacgacgtctcctaccccgaaggctacgacgcgtccacctccggctcg
cgcatcgtcgcgggcggcggcgagggcgcggccccggccaagaccttccccttcccgctc
gaccctttccagtccgaggccatccggtgcctcgacaacggcgagtccgtcatggtctcg
gctcacacgtcggcagggaagacggtggtggcgctgtacgcgatagccatgtcgctgcgc
aaccagcagcgcgtcatctacacgtcgccgatcaaggccctcagcaaccagaagtacaga
gagttcaaggaggagttctccgacgtcggcctcatgaccggagacgtcacgatcgagccg
aacgcctcttgcttggtcatgaccacggagatttggcgcagcatgcagtacaaggggtcg
gaggtcatgcgagaagtcgcttgggttatcttcgacgaggtgcattacatgcgtgacagg
gagagaggagtggtgtgggaggagagtattgtcatggctcccaagaactcgcggtttgtg
ttcctctccgcaactgtgcctaatgccaaggagtttgctgactgggtagctaaggtacat
aagcaaccttgtcatatagtatacaccgactaccgacctacacctctccagcactatgtg
tttcctgctggaggtgatggcttgtacctggtagttgatgagaatggcaagttcagagag
gacagttttcagaaatctctgaatgttcttgctcctgctagtggcggtgacaagaagagg
gacaacgggaagcgacaaaagggcgtcatggcagggaaacctcatgaggacagcgacata
ttcaagatggtgaaaatgataattcagcgtcaatatgaccctgtgattcttttcagcttt
agcaaaaaagaatgtgaatttcttgcaatgcagatggccaagatggacttgaatggggaa
gatgagaaagtgaacattgaaaccatattctggagtgctatggatttgctttcagatgat
gacaaaaagcttccccaggtttcaaatatgcttcccttattgaaacgcggcattggagtg
catcattctggtctgttgcccattctaaaggaagtgattgagatactttttcaagagggc
ctcatcaagtgtctgtttgccacagaaacattcagtattggattgaacatgcctgcaaag
actgttgtgtttaccaatgtacggaaatttgacggagatcgatttagatggttgtcaagt
ggagagtacatccaaatgagtggccgtgctggtcgtcgaggtattgatcagcgtggtatc
tgcatattgatggtagatgagaaaatggaaccctcaactgccaaaatgatgctgaaagga
ggtgctgatagtttgaacagtgccttccatttgagctacaacatgttgttaaatcaaatg
cgctctgaggatggcgatccagaaaagcttcttcggcattcattctaccaatttcaagca
gatcgagctctccctgatcttgagaagcaagtgggggaactggaaaaagagagaagttcc
atgattattgaaaatgaggagaatgtgaaggattattatgatctcttacagcagtacaaa
tctttaaagatggatgtccgtgatattgtactttcgccaaaatatgttctgcctttcttg
caatctggaaggcttgttcgtgttcaatacagtacagatgacaaacacaccttctctatt
gacgaaaatgtcacatggggaattataataaactttgaaaaggtgaaaaccaatggtgaa
gacaggaggcctgaggattatgattacactgttgacgtcctcaccagatgttctgtaaac
aaggacataagtggaaagaagattatgaagattatacctctcaaatcccatggagaaccg
gttgttatttcgttgccactttctcagatcgatggactaagtagcgttcgaatgtacata
cctaaggatcttttgcctgtagaagctcgagaaaacaccttgcggaaagttgaagaagtg
ctttcaaggttttctaaagatggggttcctctattggatccagaagaagatatggaagtg
aaatcaagctcctatcggaaagctgccagaagaatagaagctcttgagagcttattggag
aagcatgatgacatccgtagtgctccccatatccaacagaagctgaaggtgtttcatgct
aagcaagaaatagcatccaaaataaagtccataaagaaaacaatacgtgcttcgactgct
ctagctttcaaggatgagctgaaggcccgaaaacgtgttcttcgtaggctgggatacatc
accagtgaagatgtagttgaagtgaagggcaaagtggcatgtgagatcagctcagctgat
gaactgacattgactgaacttatgttcagtggtactttgaaggatgctactgttgagcag
atggtggctctgctttcttgcttcgtttggcaggaaaagcttcaggacgccccaaagccg
agggaggagctcgacttactcttctaccagttgcaggaaaccgcgcgaagggttgcaaac
ctgcagctcgaatgcaagatccagatcgacgtggaatcttttgtgaactccttccgccct
gatgtgatggaagctgtgtattcgtgggccagagggtccaagttccaccagatcatggag
atgacccaggtgttcgaaggcagcctgatcagggccatcaggcggctggaggaggtcttg
cagcagctgatcctggcatcccagtcgatcggtgagacccagcttgaagcgaaacttgag
gaggcggtcagcaagatcaagagagacattgtgtttgcagcctccttgtacttgtaa
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