Lolium rigidum (rigid ryegrass): 124685110
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Entry
124685110 CDS
T09103
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124685110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124685110
Spliceosome [BR:
lrd03041
]
Complex B
Other components
Prp19-related factors
124685110
Complex C
124685110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH
RRM_occluded
RRM_3
RRM_YTH1
zf-CCCH_3
zf-CCCH_10
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
124685110
NCBI-ProteinID:
XP_047075376
LinkDB
All DBs
Position
1:complement(26642436..26646063)
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AA seq
486 aa
AA seq
DB search
MAHRLLRDAQADGWERSDFPIICESCLGDNPYVRMLKADYDKECKICARPFTVFRWRPGR
DARYKKTEICQTCCKLKNVCQVCLLDLEYGLPVQVRDTALAINSNDAIPRSDVNREYFAE
EHDRKAAAGIDYDSSYGKARPNDTILKLQRTSPYYKRNRAHVCSFFVRGECTRGAECPYR
HEMPETGELSQQNIKDRYYGVNDPVAMKLLGKAGEMPSLAPPDDETIRTLYIGGLDNRVS
EQDLRDQFYAHGEIESIRMVIQRACAFVTYTTREGAEKAAEELANKLVIKGVRLKLMWGK
PQAQRPDGDDAGRQGHVSHGGLLPRAVISQQHSGDQPQPPGMEGQHQVAPTSHYFNIPAP
PGAEQRMYPSMDPQRMGAVVRSQEGDGKPGPQHAGQGQPSSSSGQGYPMRPPAPYYPGGQ
QYPPYYPPYGGGYMPPPRMPYPPQYPPYQPMLPQPAQPQVSSSQQPATPGQQQTQAPPTQ
QPAAQN
NT seq
1461 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaccggctgctccgggacgctcaggcggacggctgggagcggtcggacttcccc
atcatctgcgagtcatgcctcggcgacaacccctacgtccgcatgttgaaagcagattat
gacaaggaatgtaaaatctgtgcgcgcccttttactgttttccgttggagacctggtcgg
gatgcaaggtataagaagacagagatctgccagacgtgctgcaagttgaaaaacgtctgc
caggtctgcctgctagaccttgagtatggtctaccggttcaggttcgggatactgcgctc
gccatcaattcgaatgacgcaattccaaggagtgatgtcaaccgtgagtacttcgcagaa
gagcatgatcgcaaggctgcagctggcatagactatgattcttcatatggaaaggcccgt
ccaaatgataccattctgaagcttcagaggacatcaccgtattacaagaggaaccgagct
catgtttgcagtttctttgtgcgcggtgaatgtactagaggcgccgagtgcccataccgc
catgagatgcctgagactggggagttatcccagcagaacatcaaagatcgttactatggc
gttaatgatccagttgccatgaaacttttgggtaaggcaggtgagatgccatccctggca
ccacccgatgatgagactataaggaccctctacattggtggacttgataacagagtcagt
gagcaggatttgagggatcagttctatgcacatggtgagattgaatccatcaggatggta
atccaacgtgcttgtgcatttgtgacatacacaacaagagaaggtgctgagaaagctgca
gaggagcttgcaaacaagctagttatcaagggtgtgcgcctgaagctcatgtggggcaag
cctcaagcacaaaggccagatggtgatgatgctgggaggcaaggtcatgtttcccatgga
gggttgctccctagggcagttatatctcagcaacatagtggcgaccagcctcagcctcct
gggatggagggccagcatcaagtggcgccaacatcgcactacttcaatatcccagcacct
ccaggagcggagcagcggatgtacccttcaatggacccccagaggatgggtgctgtagtc
aggtcacaagagggcgatggcaaaccagggccacagcatgccgggcaaggtcagccatca
agcagctcgggacagggctatcctatgcggccgccggcaccttactaccctggtggtcag
cagtaccctccgtactacccaccatatggtggcggttacatgcctccacctcgcatgccg
tacccgccccagtatcctccgtaccagccaatgctgccgcagccagcacaaccacaagtg
agctcatcccagcagccagcaacaccagggcagcagcagactcaggcccctcctactcag
cagccagccgcccagaactga
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