Lolium rigidum (rigid ryegrass): 124687089
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Entry
124687089 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124687089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124687089
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124687089
Spliceosome [BR:
lrd03041
]
Complex A
U2 snRNP components
U2 related factors
124687089
Complex B
124687089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
ResIII
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-GeneID:
124687089
NCBI-ProteinID:
XP_047076891
LinkDB
All DBs
Position
1:193010347..193014635
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AA seq
1052 aa
AA seq
DB search
MSSGDEERAAASKHHHRDKDKKRDHSSSSSRRHRDKDRSSSRHHRDERDGERERDRDPDR
HHGGKERDREERKARERAEKEEKKERERERERERRREERDREKEKEKSRRREAVDEEEDE
DRDRKRRRRSSRHHHHRDVEPEAAPLARAEEEEDDGEEAQMRRQKKKEEDMEAEQQQLDD
EMERRRRRVKEWQEKKRREQQLQDGSSGAAATADADGGGESGKKWTLDGEESDEEDANKL
DEGDVKKSEENGGAGSGAIDVDTPNLLGNDGNSGADMEEDEIDPLDAFMNSMVLPEVAKL
ESAAPAMEIVLVANAGGMDDKDDTSNGDKKALVKGMGRIMQGDDSDSDYDDSDNNEAGSD
DEDDAEFMKRVKKTKAEKLVIVDHSKIDYQPFRKNFYIEVKDITRMSAEEVAAYRKLLEI
KVHGKDVPKPIKMWIQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGVAKTGS
GKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVLQIYSDIKKFSKVLGINCVPIY
GGSGVAQQISELKRGAEIVVCTPGRMIDILCTSSGKITNLRRVSFLVLDEADRMFDMGFE
PQITRIVQNTRPDRQTVLFSATFPRQVEILARKVLTKPVEVLMGGRSVVNKDITQLVEVR
PDSERFFRLLELLGEWFTKGKILVFVHSQEKCDSLLKELFQHGYPCLSLHGGKDQNDRES
TLADFKSNVCNLLIATSVAARGLDVKDLEIVVNYDVTNHYEDYVHRVGRTGRAGRKGCAV
TFISEEEERYAPDLVKALELSEQAIPEDLKALADRFMSKVRQGTEQAHGTGYGGSGFKFN
REEEEARQSARRAQGRAHGYEDNSDSGSEEEGGVHRQGDDVAAQSLAAAQAAALAVARAA
SIANQQATAAGSLLPILVTPNQPNNDATERALDAARNLAQNLARIQGHAVPEHYDAELEI
NDFPQNARWKITHKDTLGPIQEWTGAAITTRGTFIPQGRIVGANERKLYLYIEGPNESSV
KKAKAELKRVLEDCANHALNLPGSAQTGKYVV
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgtcctccggcgacgaagagcgggccgccgcgtccaagcaccaccaccgggacaaggac
aagaaacgcgaccactcctcctcctcttcccgccgccaccgcgacaaggaccgctcctcc
tcccgccaccacagggacgagagggacggcgagcgggagcgggaccgagatcccgaccgc
caccacggtggcaaggagcgggatcgcgaggagcggaaggcgcgggagcgggcggagaag
gaggagaagaaggagagggagcgggagcgggagcgggagcggcgtcgcgaggagcgcgac
agggagaaggagaaggagaaatcgaggaggcgggaggcggtcgacgaggaggaggacgaa
gaccgcgaccgcaagcgccgccgccggtcctcgcgccaccaccaccaccgcgacgtggag
ccggaggcggcgccgctggccagggcggaggaggaggaggacgatggggaggaggcgcag
atgcggcggcagaagaagaaggaggaggacatggaggctgagcagcagcagctcgacgac
gagatggagcgccgccgtcgccgcgttaaggagtggcaggagaagaaacgccgcgagcag
cagctgcaggatggatccagcggtgctgctgccaccgctgatgctgatggtggaggtgag
tctgggaagaagtggaccttggatggtgaggagtcggatgaggaggatgcaaataagttg
gatgagggggatgtgaagaagtcggaggagaatggtggcgctggcagcggtgccattgat
gttgacacccctaacctcctgggtaatgatggaaatagtggtgctgatatggaggaggat
gagattgaccccctcgacgcgttcatgaactccatggtgttgccagaggttgcaaagctg
gagagtgccgcaccagccatggagatcgtgcttgttgccaatgcaggaggcatggatgat
aaggatgacacgagtaatggggataagaaagcactcgtgaagggaatggggagaattatg
caaggggatgactctgactctgattatgacgacagtgataacaacgaggctgggtcggat
gacgaggatgatgcagagttcatgaagcgtgtcaagaagacaaaggcagagaagttggtt
attgttgaccattccaagattgattaccagccattccgcaagaatttctatatcgaggtg
aaggatattacaaggatgtcagctgaggaagtggcagcctaccggaagctgttggagatc
aaggtgcatgggaaagacgttcccaagccaataaagatgtggatacagagcggtctgaca
agtaagctacttgacaccatcaagaagcttggttttgagaaaccaatgcctatacaggca
caggcactaccaatcataatgagtggacgcgattgcataggggttgcaaagactggttct
ggcaagactctagcgtttgtcttgccaatgctgaggcatgtcaaagaccaaccgcctgtt
gtgcctggggatggccctattgggctcatcatggctcctaccagagagctggtgctgcaa
atatattctgatatcaaaaagttctctaaggtgcttggcatcaactgtgttcctatatac
ggaggttctggggttgctcagcagatcagtgagctgaagaggggtgctgaaattgttgtt
tgtacaccagggaggatgattgatatcctttgcactagcagtggcaagattaccaacctt
agaagagtgtccttcttggtgttggatgaagctgataggatgtttgatatgggtttcgaa
cctcagattactcgaatagttcagaacacccgtccagataggcagactgtccttttctct
gccacttttccacgacaggtggagatactggcacgtaaggtgctgacaaagcctgttgag
gttctgatgggtgggaggagtgttgtgaacaaagatatcacacaactggttgaggtgcgg
ccagacagtgaaaggttctttaggctgttggagttgcttggggagtggtttacaaagggg
aaaattcttgtttttgtacactcgcaagaaaaatgcgattcactactgaaagagctgttc
cagcacggatacccatgtttatctctgcatggtggaaaggatcaaaatgaccgagaatca
actcttgctgatttcaagagtaatgtatgcaaccttctgatcgctaccagtgttgctgct
cggggtttagatgtgaaagatcttgagattgttgtcaattatgatgtcactaatcattat
gaggactatgttcatcgtgttgggcgaacgggccgggctggtaggaagggctgtgctgtg
acatttatctctgaggaagaggaacgctatgcaccagaccttgttaaggctttagaacta
tctgaacaggccattccagaggacctgaaagccttagcggatcgatttatgtcaaaggtg
aggcagggaacagagcaggcccatggaacaggatatggtggaagtggtttcaagttcaac
agagaagaggaggaagcacgacaatccgcgagaagggctcagggaagagctcatggatat
gaggacaattcagattcaggttccgaggaggaaggaggtgtacacagacagggagatgac
gttgcagcacaatctcttgccgctgctcaagccgctgctctagctgtagccagggctgct
agtattgccaaccagcaagcaacagctgcaggctccttgcttcctatactggttacacct
aaccaaccaaacaatgatgccacagaacgtgcacttgatgctgcaaggaacttagcacaa
aatctggcaaggatacagggccatgcagttccagaacactatgatgctgagcttgagatt
aatgatttcccacaaaatgctcgctggaagatcactcacaaagatacattgggtcctatt
caggaatggactggagctgcaattactacaaggggaacctttattcctcaaggcagaatt
gttggtgctaacgagcgcaagctgtacctgtatattgagggtcccaacgaatcttcggtg
aagaaggcaaaagcagaactgaagcgtgtccttgaggattgtgcaaaccatgcgctcaat
cttcctggttctgctcaaaccggaaagtacgttgtttga
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integrated database retrieval system
