Lolium rigidum (rigid ryegrass): 124687163
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Entry
124687163 CDS
T09103
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB1
KO
K03006
DNA-directed RNA polymerase II subunit RPB1 [EC:
2.7.7.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03020
RNA polymerase
lrd03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
124687163
09124 Replication and repair
03420 Nucleotide excision repair
124687163
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124687163
03400 DNA repair and recombination proteins [BR:
lrd03400
]
124687163
Enzymes [BR:
lrd01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
124687163
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
124687163
DNA repair and recombination proteins [BR:
lrd03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
124687163
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_6
RNA_pol_Rpb1_7
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_R
DUF7069
TACC_C
Motif
Other DBs
NCBI-GeneID:
124687163
NCBI-ProteinID:
XP_047076938
LinkDB
All DBs
Position
1:193714458..193722547
Genome browser
AA seq
1862 aa
AA seq
DB search
MDARFPYSPAEVAKVQCVQFGILSPDEIRQMSVVVIEHAETMERGKAKPGGLSDPRLGTI
DRKIKCDTCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILVPEEDPK
FKQALKIKNPKNRLRRIYDACKSKKTCDGGDELEAQDQQDTDEPVKKRSGCGAQQPNITV
DGMKMVAEFKAAKKKNDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLSAKYAR
PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT
EFAQLLQFHIATYFDNDLPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
TVITPDPNINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT
LLGCRKITKRDTLIEKDVFMNILMWWEDFDGKVPAPAILKPRPIWTGKQVFNLIIPKLIN
LIRFSAWHAETETGFITPGDTMVRIEKGELLSGTLCKKTLGTGTGSLIHVIWEEVGPDAA
RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMEKINETIGKAKNDVKELIKQAQEKSL
EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
ACVGQQNVEGKRIPFGFVDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
LDSLKMKKNEFDNVYRYELDDENWRPTYMMPEYVDDLKTIREFRNVFEAEVQKLEADRLQ
LGTEITTTGDNTWPMPVNLKRLIWNAQKTFKIDLRRPSDMHPMEIVEAIDKLQERLKVVP
GDDAMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKESFEWVIGEIESRFLQSLVAPG
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVFLK
PEVGKKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDVEFVRSYYEMPDEDI
DPDKISPWLLRIELNREMMVDKKLSMADIAEKINHEFDDDLSCIFNDDNADKLILRVRIT
NDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKYGKVNKFEENEGFKP
DNEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDASVYAESDY
LRGVTENIMVGQLAPIGTGGCGLYLNDKMLQQAIELQLPSYVDGLDYGMNGMTPGRSPIS
GTPYIDGGMMSPMLSPNFRASPITDAQFSPYVGGMSFSPIPSNYSPSSGGGYSPSSPVFS
PGPGQGYSPTSPSYSPASPSYSPTSPSYTPGSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
PSYSPTSPSYSPTSPSYSPTSPSYSPTSPVYSPTSPAYSPTSPAYSPTSPSYSPTSPSYS
PTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPGYSPTSP
SYSPTSPNYSPTSPSYNPSSAKYSPSHAYSPSSPRMMSPYSQTSPNYSPTSPSYSPTSPS
YAQPSPSYSPTSPHTTSGGPSPDYSPTSPNYSPSASYSPTAPGYSPSSTGPQTTDKDDEI
AP
NT seq
5589 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgaggttcccttactcgccggccgaggtggccaaggtgcagtgcgtgcagttc
ggcatcctcagcccggatgaaatcagacaaatgtcagtggtggtgatagaacatgcagag
accatggagagagggaaggccaaacctgggggtttgagtgacccccgtttgggtacgatt
gaccgcaagatcaagtgcgatacatgtatggctgggatggccgagtgcccaggacatttt
ggtcaccttgagctcgcaaagccaatgttccacattggattcatcaagaccgtactctcc
ataatgcgctgcgtgtgcttcaactgttccaagatcctcgtgcctgaggaggaccccaag
ttcaagcaggctctgaaaatcaagaatccaaagaacagattaagacgaatctatgatgct
tgcaagagcaaaaagacttgcgatggtggtgatgaacttgaggctcaggatcagcaggac
actgatgaaccagtaaagaaaagaagtggttgtggtgctcagcagccaaatatcacagtt
gatggtatgaagatggttgcagaatttaaagcagcaaagaagaaaaatgatgatcaagat
caactccctgagccagtggagcggaagcaaattctctctgccgagagggtacttaatgtt
ctcaagcgtatcagtgacgaggactgtcttttattgggcctcagtgctaaatatgctcga
cctgactggatgatacttcaagtacttccgattcctccaccacctgtgagaccatctgtc
atgatggatacttcctccagaagtgaggatgatttgactcatcaattagcgatgataatt
cgacataatgagaatttgaggaggcaagagagaaatggagcaccagctcatattataaca
gagtttgctcagttgttgcagtttcacatcgcaacatactttgacaatgatcttcctgga
caaccaagggcaactcagcgttctggaaggcctattaagtcaatttgcagcaggctgaaa
gcaaaagaaggtcggattagaggaaacttgatggggaagcgtgttgatttctcagctcgt
acggtcatcacaccagatcccaatatcaacattgatcagttgggggtgccatggagtatt
gcattgaatctgacatacccagaaactgtaaccccatacaacattgagaggttgaaagag
ctagtagaatatgggcctcaccctccccctgggaagacaggtgccaagtacattatcagg
gaagatggtcagaggcttgatctacgctatgtgaagaaaagtagtgatcagcatttggag
ctgggctacaaggttgaaaggcacctcaatgatggagattttgttcttttcaatcgacaa
cccagtcttcacaaaatgtctattatggggcatcgcattaaaattatgccctactcaact
ttccggctaaacttgtctgtcacatcaccatacaatgctgattttgatggggatgaaatg
aatatgcatgttcctcagtcatttgagaccagggctgaagttctagagctgatgatggtg
ccaaaatgtattgtgtcacctcaagcaaataggcctgttatgggcattgtccaggacacg
cttcttgggtgtcggaaaatcaccaaaagggatactcttattgaaaaggatgtatttatg
aacatcttaatgtggtgggaagattttgatgggaaggttcctgcccctgccattttgaaa
ccaaggccaatttggactggcaaacaagttttcaacttgattatccccaagctaatcaat
ttgattagattttcagcctggcatgctgaaacagaaactggatttattactcctggtgat
accatggtccggatagagaagggagagcttctgtctggtacactttgcaaaaaaactctt
gggacaggaactggaagtcttattcatgttatttgggaggaagtagggccagatgctgca
cggaagttcttgggtcacacacagtggctggtcaactattggctcctgcaaaatgggttc
agtattggaattggggatacaattgcagatgcaagtaccatggaaaagattaatgagact
atcggaaaagctaagaatgacgtgaaggagcttattaaacaagcacaagaaaaaagtttg
gaacctgagccaggacgcacaatgatggagtcttttgaaaacagagtaaaccaggttctt
aacaaggctcgtgatgatgctgggagtagtgctcagaagagtttatctgagagtaacaat
ttgaaagctatggtcactgcaggctcgaaaggaagtttcattaatatttcacaaatgact
gcttgtgtcggccaacagaatgttgagggcaagcggatcccatttggttttgttgatcgt
acattgccccacttcacaaaagatgactatggtcctgaaagccgtggatttgtggagaac
tcttaccttcgaggtctaacaccacaggaatttttcttccatgctatgggtggtagagaa
ggtcttattgatactgccgtgaaaacttctgaaactggctatattcagcggcggcttgtg
aaggctatggaggacatcatggtcaagtatgatggtacagtgagaaattctttaggtgat
gtcattcagttcttgtatggagaagatggcatggatgctgtgtggattgaatcacagaaa
ttggactccctgaagatgaaaaagaatgagttcgataatgtatatcggtatgaactggat
gatgagaactggaggcctacgtacatgatgcctgaatatgttgatgatttgaagaccatt
cgagaattcagaaatgtgtttgaggcagaggttcagaaattagaagctgaccgtttacag
cttgggactgagattaccacaactggcgacaacacatggcctatgcctgtgaatctcaag
cggctgatctggaatgctcaaaagacattcaagattgatttaagaagaccttctgacatg
cacccgatggaaattgttgaagcaatagataagctgcaagaaagacttaaggttgtccct
ggtgatgatgcaatgagcattgaagctcagaagaacgctactttgttcttcaatatcctg
cttcgtagcacatttgctagcaagagggtcttgaaagaatacaggcttacaaaggaatct
tttgaatgggtcattggtgagattgaatcgagattccttcagtctttggtagctcctggg
gaaatgattgggtgtgtggctgcacagtccattggagaaccagcaactcagatgacgctg
aatactttccattatgctggtgtcagtgcaaagaatgttacccttggtgttcccaggttg
agagagatcattaacgttgccaagaagataaagactccatcactgtctgttttcctgaag
cctgaggtgggcaagaagaaagaattggccaagaatgtccaatgtgccctggagtacact
acactacgtagtgtgacgcatgccactgagatatggtacgatcctgatcctctgggaacc
atcattgaagaggatgtggaatttgtcagatcatactatgagatgcctgatgaggatatt
gacccggataagatctctccttggctgctgcgtattgaactgaaccgtgagatgatggtt
gataagaagttgagcatggctgatatcgcagagaagatcaatcatgaatttgatgatgac
ttgtcatgcatattcaatgatgataacgcagataagctcatcctccgtgtccgtataaca
aatgatgaagctccaaagggagaaatacaggatgaatctgccgaggatgatgtctttctc
aagaagatcgaaggtaacatgttgaccgagatggcccttcgaggcattccagacattaac
aaggtcttcatcaaatacgggaaggtcaataaatttgaggaaaatgaaggtttcaaaccc
gataacgagtggatgcttgatacagaaggcgtcaacctcttggcggtgatgtgtcatgag
gatgttgatgctacaaggacaacaagtaatcatttaattgaagtcattgaagttcttggg
attgaggctgtccgcaggtctctcttggatgagctgagggtggtcatatcttttgatgga
tcttatgtgaattacaggcatctggccattctatgtgatacaatgacatacagaggtcat
ctgatggccattactaggcacggcataaatcgtaatgacacagggcctcttatgagatgt
tcctttgaagaaactgtggatatcttgcttgatgcttctgtatatgccgaatccgactac
ctgagaggtgtcactgagaacattatggttggccagcttgctcctattggtacaggaggc
tgtggattgtatctgaatgacaagatgctacagcaggccattgagcttcaactcccgagc
tatgttgacggtcttgactatggcatgaatggcatgacaccagggcgttcacccatctct
gggacaccttacattgatggaggaatgatgtcaccaatgctgagtccgaatttcagggct
tcccccattacagatgctcagttctctccgtatgttggtggcatgtcgttctcgcctatt
ccgtcaaactacagcccatcctctgggggtggttacagtccatcttctcctgttttcagc
ccagggccagggcaaggttacagccccacttctccatcatacagccctgcatcacccagc
tacagtcccacctctccatcatatacgcctggctctccttcctacagtcctactagccca
tcatactctccgaccagtccatcatactcaccaacatctccgagctacagtcctacatct
ccgagctacagccccacatctccgagctacagccccacatcgccaagctacagccccaca
tcgccgagctacagccccacatcgccagtttatagcccaacctctccagcatatagcccg
acatctcctgcatacagcccgacgtcgccatcttacagcccaacgtcaccatcttatagc
ccgacgtcgccatcatacagtcctacatctccttcatacagccccacgtcaccatcatac
agccccacgtctccttcatacagccctacatctccttcatacagccctacatcgccctca
tacagcccaacatcgcctgcatacagccctacatcgcccggctacagcccgacgtctccc
agctatagcccaacttcaccgaattacagtccaacttcaccgagctacaatccttcttcg
gccaagtacagtccttcacatgcttactctccaagcagcccaaggatgatgagcccttat
agccaaacttctccaaactacagccccacctcaccgtcttactcgcccacctcaccgtcg
tatgcacaaccaagtccgtcatatagcccaaccagcccgcacactacctcaggaggacct
agcccagattacagcccaacttctccaaattacagccctagcgcaagctactcccccact
gcaccaggctactccccgtcatccaccgggccgcaaactactgacaaggacgacgagatt
gctccttga
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integrated database retrieval system
