Lolium rigidum (rigid ryegrass): 124687540
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Entry
124687540 CDS
T09103
Name
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog
KO
K28108
shortage in chiasmata 1
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
lrd03036
]
124687540
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Meiosis-specific proteins
Others
124687540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
124687540
NCBI-ProteinID:
XP_047077270
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Position
2:157724961..157731436
Genome browser
AA seq
1515 aa
AA seq
DB search
MTLRYPTELADSIYQVEKIPVKHNDEADHFSATNINLSEIAAFDCGAKIPQLEVCRHSWE
LDECPTKAEISSIFHNLVEHLGEAQVQHSAFKSTEFSGPIDVDMLALVAKDAPSADYQVD
EPTTVRAAVEMDLVRINGNILVDRNSALYPLKPDGTCSDLPCSMLLEEVQIIDFPSHDVS
KTLVQSETAELSTSDEIFKDDFDPARRFYESVVSSELVLVDDAFISLPTPILTDDDITLR
SMIPSMEEVLCSLKPHSLSSADGIYLDWHLLLEGPCNREICSTYASMVEEVKSCHSNSEL
QVSCQETSAPSFDFLEYFWRSAKNQDEDKQKNIYVPAHDDPPAVVETAQKYRQEFDTGGH
SHMEKLSSKKPASLFESKSQSNDLNFYLNVRSGTKRGANEYSVSTLDIPTLKEQAAPSST
MPKVEKLIEIHPVSLSDSIRVLIKHIHISYTSALQESASLRHTFSDGHGLSISKQKLLGL
ITGEGSDGFYNHCKYEDKMELMVLYGLKQVAYYLCFFGLHAAHMYISNLIGSFENIPERL
RHVHCFIGEARWKAEKHQFDSHPSLFDIEKILRSNTRTNQKILIVADRAFWVPLGHKLTS
LKMTFGELGKDPDAAYLDQVNKANSKTSVLGGLAKSDCILLDNKDIPASFPFNEFVIVLE
YGGPNKSSTLLSLAPKLDGFPPLHFLYVKVDTEDSSIALVEDNPTEQDLKATLDTVLHTL
QKDLQEKMNKMRIVDSLNFIPATNPLQGLQENLVKHLTADSTISFPADDQQLKLENLEKK
NTADAPNFVPVAEQRHIEEILSRRDILDPQNFVPAVDKSSSTSSVSANVMKAPQDNLSAT
DLPSSVKVGSILSGRLSTPEAVIVVNTGSHGKSMLFSRRSSYQQILSLEKGGMQVVERDI
DLPVDLILSASDCLVWCETKLFGCSEFSMPTETSSITSFVETIATNILMSISFCFSGCIM
VFEGEPHSLAAVMESSDSLYAAAASLVMNLQLFFSHTPKSTDEIILSCIRKVARLNRAPL
DIPESESLAESFLTKFPSINPLSAYIILSSGGTLVEFLSWSHERRIQAVGEHLLSPQSIT
LFSALCKFGELGESRSVMTECSSVDSDICSALLQSPRKRRKCAPQAFAVPTSDPLCLDPL
NQLPGDYVEHDNVFSPPKLRRFSDMEDATPHLREAFMFDQSLSRGGEGVSCLPRKHGVDA
MIHNQIMGDPFSNELSRDTRTYDRRASGMVDTHDFSWQPEFRGKEPMKSSFPASEPSFSR
TYSHPVFPTALEINDDTGDWDFSAGTHHTLKGHVHGDTSTLSRRYDDVGSRYHEPREEMM
QSQGGSLDFLKHDVGSHAASHGSGWEIDYLRQMNENRKSRQERSSGMMSNSRMRDGASEI
RSPPSIESFRYRGDRDTPSRGRSLSIGTRYRGDRDTPSRDRSPPAGTHRYGKAREGTKAH
TQGVRKYFKAQPSASQERRIQPSIDPSWTPVDKRARQKLSFATDGKEKQSKLIWRNQNSP
GIGCGFRKRYREEGT
NT seq
4548 nt
NT seq
+upstream
nt +downstream
nt
atgactttaagatatccaactgaacttgcggactcaatttatcaagtagaaaaaatccct
gtgaagcataatgacgaggcagaccatttctctgcaacaaatattaacttgtcagagatt
gcagcatttgattgtggtgcaaaaataccacaattggaggtttgtaggcattcctgggag
cttgatgagtgtccaaccaaggcagagatatccagtatttttcataaccttgttgagcac
ttgggtgaagcacaggttcagcattcagcgtttaaatcaacagagttctcgggaccaatt
gatgtggatatgctggccttggttgccaaagatgcaccatctgcagactatcaagtagat
gaaccaacaacagtcagggctgcagtagaaatggatcttgtgaggatcaatggtaatatt
ctggttgacagaaactcagcattataccctctcaagcctgatgggacttgctcagacttg
ccatgctcaatgttgttagaagaagtccaaatcattgattttccttcacatgatgtctcc
aagacgcttgttcagtcagagacagctgagctgagtacatctgatgaaatattcaaagac
gactttgatccagcaagacgtttctatgaatcagtggttagctctgagttggtactggtt
gacgatgcattcatatcactgcctacacctattttaactgatgatgatataaccctgaga
tctatgattccctccatggaagaagtactctgctctctgaaaccacattctctctcttca
gctgacggaatttatttggactggcatcttttattggaaggtccatgcaaccgggagatc
tgctctacttatgcaagcatggttgaggaggtaaaaagttgccattcaaattctgagctg
caagtcagttgccaggagacatcagcacccagctttgattttcttgagtatttttggaga
agtgcaaagaaccaagatgaggacaagcagaaaaatatttatgttccagcccatgatgat
ccacctgctgtagtggaaacagctcagaaatacagacaagaatttgatactggaggccac
agccacatggaaaagttgagttcaaaaaagccagcttccttattcgagtcaaagtcgcaa
tcgaatgacctgaacttctacttgaatgtcagaagcggcaccaagagaggagctaatgag
tacagtgtttctacattagatatccccactttgaaagagcaagcagctccttcttcaacc
atgcctaaagttgaaaagctcatagaaattcatcctgtcagcctctcagattctattcga
gtccttattaaacacattcatataagttatacttctgctttgcaagaaagtgcatctttg
aggcatactttctccgatgggcatggtttaagcatttcgaagcagaaacttcttggactg
ataactggagaaggttcagatggcttctataatcactgtaaatacgaagataagatggaa
ctcatggtactgtatggactaaaacaggttgcatactacctctgtttctttggtttgcat
gctgcccatatgtacataagcaacctgattggaagttttgaaaatattcctgagaggtta
aggcatgttcattgtttcatcggtgaagcacggtggaaagccgagaagcaccagtttgac
tcccatccatccttatttgacattgagaaaatcctcagatctaatacacggacaaaccaa
aagatccttatagttgccgacagagctttctgggtgccattgggtcataaattaacttca
ctgaagatgacatttggtgaactaggaaaagaccctgatgcagcttatctagatcaggtg
aacaaggcgaattctaaaacttcggtgctgggaggattagcgaaatcagactgcattctg
ctagataacaaggacattccagcttcattccctttcaatgagtttgttatcgtactggaa
tatgggggtccaaataaatcatctaccttgttgtctctggctcctaaattagatggtttt
ccaccactgcatttcctctatgtcaaagtggatactgaagactcttcgattgcacttgtt
gaggacaatcctacagagcaagatttgaaagccacattggatacggttttgcatacactt
cagaaggatctgcaagagaagatgaacaaaatgcgtattgttgattcgttgaacttcata
ccagcaactaatccactgcaaggactgcaggaaaatctagtcaaacatctcactgctgat
tcaacaataagcttcccggcagatgatcaacagctcaaactagaaaatctggagaaaaag
aatactgctgatgcacctaattttgtgcctgtagctgaacagcggcacatagaggaaatt
ttgagcagaagagatattcttgatccacaaaattttgtgcctgcagttgacaagagcagc
tctacttcttccgtgtctgcaaatgtgatgaaagccccgcaagacaatctatctgctact
gacttgccttccagtgtaaaagttggcagcatcttatcaggaagattgtctaccccagag
gcggtgattgttgtaaatactggaagtcatggaaagagtatgcttttctcccgtagatca
tcttatcagcagatactatctttggagaaaggaggaatgcaggttgtggaacgagacatt
gatcttcctgtggacctaatactcagtgcttcagattgcttagtatggtgtgagaccaaa
ctctttgggtgcagtgaattctcaatgccaacagagacatctagtataacaagttttgta
gagaccattgcgaccaatattctgatgtcaattagcttctgtttcagtggctgcataatg
gtctttgaaggagaacctcactcccttgctgctgtaatggaatcatccgattctctatat
gctgcagctgctagtctggtcatgaacttgcagctattcttctcacacactcccaagtca
acagatgagataattcttagttgcatcagaaaggtggctaggttaaatagagctcctcta
gatatacctgaatcagaaagcttagctgaatcatttctcacaaaatttccttcaatcaac
cccttgtctgcatacataatactttcttctggaggcaccctcgtggagttcctcagttgg
tcacatgagcgtcgcattcaggctgttggagagcatctgttgtctccacagagcattact
ctgttcagtgctttatgcaaatttggcgagctaggtgaatctaggtctgtaatgaccgaa
tgctcttctgtagattcagacatctgcagtgcattgctgcagtctccaaggaagaggaga
aagtgtgccccacaagcttttgcagtaccaaccagtgatcctctctgtctcgatcctcta
aaccaattgcctggtgactatgtagaacatgacaatgtattctcaccgcccaagttgagg
aggttctctgacatggaggatgcaacacctcacctccgagaggccttcatgttcgaccaa
agtttgagtaggggaggcgagggtgtctcttgtcttccaagaaagcatggcgttgatgca
atgattcacaatcagataatgggtgatccattcagcaatgaattgagtagagatacgagg
acatatgatagaagggccagcggtatggttgacacacacgacttctcttggcagcctgaa
ttccggggtaaagaaccaatgaaaagctcttttcctgcaagcgaaccatcattcagcaga
acttacagccatccagtatttcccactgcattggagatcaacgacgatactggtgactgg
gacttctcagcaggtacacatcacactttgaagggtcatgtacatggggatacttccaca
ctctctcgcagatatgacgatgtgggcagcagataccatgaaccacgagaggaaatgatg
cagagtcaagggggctcgcttgattttctgaaacatgatgttggctctcatgcggcttca
catggttcaggctgggaaatcgattatctaaggcaaatgaacgaaaacaggaaatcacgt
caggagagatcatcaggaatgatgtcaaactcgagaatgagggatggagcctctgagatt
cgaagtcctccatcaattgaatccttcagataccgaggagacagggatactccttcgagg
gggcggagcctttctattgggactagataccgaggggacagagatactccttcaagggac
cggagccctcctgccgggactcaccgatatgggaaggccagagaaggaactaaagcacat
acccagggggtcagaaaatatttcaaggcgcagccaagtgcaagtcaggaacgcaggata
cagccgtccatcgacccatcatggactccagttgacaagagagcgagacagaaactttcg
ttcgcaacggacgggaaggaaaaacaaagcaagctgatctggagaaaccagaacagccct
ggtatcgggtgcggcttccggaaaagataccgggaggaaggtacgtag
DBGET
integrated database retrieval system
