Lolium rigidum (rigid ryegrass): 124688459
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Entry
124688459 CDS
T09103
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52A-like isoform X1
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124688459
03041 Spliceosome [BR:
lrd03041
]
124688459
03036 Chromosome and associated proteins [BR:
lrd03036
]
124688459
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124688459
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124688459
mRNA cycle factors
Common to processing body (P body) and stress granule
124688459
Spliceosome [BR:
lrd03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
124688459
Chromosome and associated proteins [BR:
lrd03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
124688459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
SBP_bac_11
CMS1
Motif
Other DBs
NCBI-GeneID:
124688459
NCBI-ProteinID:
XP_047078094
LinkDB
All DBs
Position
2:245683933..245690072
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AA seq
597 aa
AA seq
DB search
MASGVRSIRDPRPLPSSRGASARRIHPLLAIVSDFPPSSTYLLARVCPNSGAHSTRACGG
ASSPPPASGGEIRGGSRVGSGGGPLDADERASTLPISIHEEAKKFSHQTGIKVKVAYGGT
SMIQQQLRDIERGVDILVATPGRLVDMIERARVSLEAIKYLVMDEADRMLDMGFEPQIRK
IVDGMGMPRKSMRQTMLFSATFPPQIQRLASDFLSKYIFITVGRVGSSTDLITQKLEFVT
HDEKKTYLLNLLQEQSFCSSDGKPQQPLTLVFVETKRDADSLRYWLYNKGFPATAIHGDR
TQEERESALRSFKSGLTPIMVATDVVARGLDVPNVSHVINYDLPKSIEDYVHRIGRTGRV
GNAGSATAFFTEQNHPIAKGLLELMTEAKQNVPGWLEDYAGRPCYGGDYRNGGDYSGYSG
GGGSDSYSGGGGRGGYGGGGGRGGYGGGGGDSYSGGGGRGGYGGGGGRGGYGGGGGRSYS
GGGGDSYSGGGGRGGYGGGGGRNYSGDGGDSYSGGRGGGGRSYSGDGGGGGRSYLGDGGG
GGGGRSYSGDGGVNSYSRDGGGRYSSGGGSSRANDPPPRYYPSYPMGTTSISASGWD
NT seq
1794 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgggcgtgcgctcgattcgcgatcctcgtcctcttccatcttctcgtggagca
tctgctcgacgaatccacccactactggccattgtctctgattttccacccagttccaca
tatcttctggctagagtttgccctaactctggcgctcacagcacaagagcctgtggtgga
gcgtctagcccacctccggcgagtggcggcgagattcgcggcgggtcgcgtgtaggaagc
ggcggcggccccctggacgccgacgagcgtgcgtctacgctgccaatttcgattcacgag
gaggccaagaagttctctcaccaaactggaatcaaagttaaggtggcatatggaggaact
tcaatgattcaacagcagctacgtgatatagaaagaggtgtggacattcttgttgctaca
cccggccgccttgtggacatgattgaaagagcaagggtctctcttgaggcaattaagtac
ctggtaatggacgaggctgacaggatgctggatatggggtttgagcctcagataagaaag
attgttgatggcatgggtatgcctcgaaagtccatgagacaaactatgcttttcagtgca
acctttccaccacaaatacagagactggcttcagactttttgtcgaagtacatatttatc
actgttgggagggtgggttcaagtaccgatctaattacccagaaacttgagtttgtcact
catgatgagaaaaaaacctacctgctaaatctcctgcaggagcaatctttctgttcatct
gatggcaagccgcagcagcctctaacactagttttcgtggagacaaaacgcgatgctgat
tcattgaggtattggctatacaacaaaggtttccccgcaacagcgatccatggtgacaga
acacaagaggagagggaaagcgcattgagatccttcaagtctggcttgactcctatcatg
gtcgccactgatgtagtcgcgcgtggcctggatgtcccaaatgttagtcatgtgatcaac
tacgaccttcccaagagcatcgaggactatgtccacaggattggaagaactgggagagtt
ggaaatgctgggtctgccaccgccttcttcactgaacagaaccaccccattgcaaaggga
ctgctggaactgatgactgaggcaaaacagaacgttcctggctggctagaggattacgca
gggaggccatgctatggaggagattatcgcaatggtggggactattctggctactctggt
ggtggtggcagtgacagctactcaggtggtggtggccgtggtggctacggtggtggtggt
ggccgtggtggctacggtggtggtggcggtgacagctactcaggtggtggtggccgtggt
ggctacggtggtggcggtggccgtggcggctacggtggtggtggtggcaggagctactcg
ggtggtggtggtgacagctactcaggtggtggtggccgtggtggttacggtggtggtggt
ggcagaaactactcgggtgatggcggtgacagctactcaggtggtcgtggtggtggcggc
aggagctactctggtgatggcggtggtggtggcaggagctacttgggtgatggcggcggc
ggtggtggtggcaggagctactctggtgatggtggcgtcaacagctactcccgtgatggt
ggtggcagatactccagtggagggggctcctccagggcaaatgatccacctccgcggtac
tacccttcctaccccatgggcacgacaagcatcagcgcctctggctgggactag
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