Lolium rigidum (rigid ryegrass): 124689137
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Entry
124689137 CDS
T09103
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124689137
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124689137
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124689137
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124689137
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124689137
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
zf-CCCH_4
zf-CCCH
Torus
zf-CCCH_3
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
124689137
NCBI-ProteinID:
XP_047078674
LinkDB
All DBs
Position
2:4805732..4814049
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AA seq
353 aa
AA seq
DB search
MDGDDGDLVFDFEEDLDAVADADAASYGSAASATATATAPALPSSYDNGPAAVRPRHDQG
RGSSAETMIHEMDGDVGDLVFDFEDDLDADAAAAGSGSVALGAASALPSSYDLGPAAVEH
RHDQGLGSRSSRQTVCPYWLLGVCMMGDSCEFLHEYDLDRMPVCHYLHSYGYCRLPDCVF
KHNTEHLEEYSMHNVGFCPYCPHCQYRHVKKPGSPPPAEEAVKKFQQMNSLNYGSSSGIY
QPRENNSNQQEKPQVQHGLVLKNQNLAANATPVVQEPAAHHVQTANPQHVPPHIQQQQQH
NAQLQGVPNDSSSSPLPQGQSRYSAVISCKMENLEISVQQGIWASPKAVTMSF
NT seq
1062 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgacgacggcgatctcgtctttgatttcgaggaagacctcgacgccgtcgcc
gacgccgacgccgccagctacggttccgctgcctcggccacggccacggccacggccccc
gccttgccgtcctcctacgacaacggccccgccgcggtcaggccgcgccatgaccaaggc
cgcggcagctccgccgaaaccatgatccacgaaatggacggcgacgtcggcgatctcgtc
ttcgatttcgaggacgacctcgacgccgacgccgccgccgccggatccggttccgttgcc
ttgggcgcggcctccgccttgccgtcctcctacgacctcggccccgccgccgtcgagcac
cgccatgaccaaggcctcggcagccgcagctcccggcagaccgtgtgcccgtactggctg
ctgggcgtgtgtatgatgggcgactcctgcgaattcctccacgagtacgacctggaccgc
atgccggtgtgccactacctccactcgtatggctactgccgcttgccagattgcgtcttc
aagcacaacaccgagcaccttgaggagtacagcatgcataacgtggggttttgcccttat
tgccctcattgccagtacaggcatgtgaagaaacctgggtcgcctcctccggctgaggaa
gctgtcaagaagtttcaacagatgaattcgttaaactacggctcatcaagtggaatttat
cagcccagagaaaataacagtaatcagcaggagaaacctcaagtccaacatgggttggtg
ctaaagaatcaaaatttggctgcaaatgctactcctgtagtgcaagaacctgctgcacat
catgttcagacagcaaatccgcagcatgtaccaccacacatacagcagcagcaacaacac
aatgctcaactgcaaggtgtccctaatgattcatcttcaagcccacttccacaagggcaa
tcaaggtactctgctgttataagttgcaagatggagaatttggaaatatcagttcagcag
ggtatttgggcctccccaaaagcagttacgatgtcattttaa
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