Lolium rigidum (rigid ryegrass): 124689138
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Entry
124689138 CDS
T09103
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124689138
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
lrd03021
]
124689138
03019 Messenger RNA biogenesis [BR:
lrd03019
]
124689138
Transcription machinery [BR:
lrd03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124689138
Messenger RNA biogenesis [BR:
lrd03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124689138
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_CCCH_4
Torus
YTH
zf-CCCH_3
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
124689138
NCBI-ProteinID:
XP_047078675
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All DBs
Position
2:4825960..4838595
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AA seq
398 aa
AA seq
DB search
MASLRAYGPHGNASWRRLPARDVWTFSPAALSSAASTGGICTFASTAAASPPPSAGPSAR
PPQIPPCASPLSPAPHRPAAQPPSFHYKPPDHLLLLLPHRRTAEQHPSRPTKRPLLTDAS
SPFQRGLLMEFDDSDLVFDFEADLQDAGSDSSVVVGAASASNASLDPAAAGQHHDQGPVR
RTVCKYWLKGLCMKGQSCGYLHQYDLDRMPVCHFFRADGYCDKLDCIFKHNAEDAKECTM
YNMGFCPNGPCCRLRHVKKPGPPPPADEVVKKLQQMNPRNYGSSSATYQARNNNSNQPEK
ESQNLAANATPVVKQPAAHHAQTENPQHVPPPHTQEQQQHAQVQGVPNGSSDQATITASP
LLQGQSRHSVVKSCNQENLEISVQQGVWAFQKGVMMSF
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgctacgggcctacggcccacatggaaacgctagctggagacgtttgcctgcg
cgggacgtttggacgttttcgccggcagcgctctcttccgcagcctccaccggggggatt
tgcacatttgcctccaccgccgccgcctcgcctccacccagcgccggcccctccgcccgt
ccgccccagatcccaccgtgcgcctctcctctttctcccgcaccgcaccgtcccgcagcg
cagccaccctcctttcactacaagccgccggaccatctcctgctcctactaccgcaccgc
cggaccgccgagcagcacccgagccgccctaccaagcgccctctcctcaccgacgcatca
tctcctttccagcgaggtttgctcatggaattcgacgacagcgacctcgtcttcgatttc
gaggccgacctccaagacgccggctccgactcctccgttgtggtgggcgccgcctccgcc
tccaacgcatcactcgaccccgccgcggccgggcagcaccatgaccaaggccccgtccgg
cggaccgtgtgcaagtactggctgaagggcctgtgcatgaagggccaatcctgcgggtac
ctacaccagtacgacctggaccgcatgccggtgtgccacttcttccgcgccgacggctac
tgcgacaagctggattgcatctttaagcacaacgccgaggacgccaaggagtgcaccatg
tataacatggggttttgccctaatggtccctgttgccggctcaggcatgttaagaaacct
gggccgcctcctccggccgacgaagttgtcaagaagcttcagcagatgaatccgcggaac
tatggctcatcaagtgcaacttatcaggccagaaacaataacagtaatcagcccgagaaa
gagagtcaaaatttggctgcaaatgctactcctgtagtgaaacaacctgctgcacatcat
gctcagacagaaaacccacagcatgtaccaccaccacacacacaggagcaacaacaacat
gctcaggtgcaaggtgttcctaatggttcatctgaccaagctactataactgcaagccca
cttctacaagggcaatcaaggcactctgttgttaaaagttgcaaccaggagaatctggaa
atatcagttcagcagggtgtttgggcgttccaaaaaggagtaatgatgtcattttaa
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