KEGG   Lolium rigidum (rigid ryegrass): 124689192
Entry
124689192         CDS       T09103                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    124689192
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:lrd03021]
    124689192
Enzymes [BR:lrd01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     124689192
Transcription machinery [BR:lrd03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     124689192
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_1 RNA_pol_Rpb1_3
Other DBs
NCBI-GeneID: 124689192
NCBI-ProteinID: XP_047078712
LinkDB
Position
2:9130174..9163130
AA seq 2032 aa
MALSREAAPGAGRREFVTDVDPHTNIVAESERRLAVHGVIPVFGELKPALTTADAARLFA
EHFGTTASAVRVTSHGPCEFLLFFTDAAKAMSKTLPFKVRVYLESVPEHAHDVVSVSPLF
AGKAMVDFQVNKLAMEEDQSAVLVAEGSIKSIKLSLSTEAEICTYSINDCPVTHPSQLGN
PFLGLPLESGKCESCGASENGKCEGHFGYIELPVPIYHPCHVSELRQLLTLVCLKCRRMK
KAKGKQSNGKENVSVTACHYADCRALPALSVKETKTTDGVRLELKASPKKHMTERSWNFL
DQYGFHYGGASHNRILLPEEALNILKKIPDETKKKLAARGYIAQSGYVMKYLPVPPNCLY
IPEFTDGQSIMSYDISISLLKKVLQKIEQIKKSRAGPPNFKSHDVESSDLQLSIGQYIQL
RGTTKGPQDAKRYAISTDSSHLSTKQWLDKMRTLFISKGSGFSSRSVLTGDPYIGVDVVG
LPSEVAKRITFEEQVTDININRLQEVVDKGDCLTYRDGETTYAITVGSKGYTTLKVGQTI
SRRIVDGDVVFLNRPPSTHKHSLQAFKVYIHDDHTVKINPLICSPLAADFDGDCVHIYYP
QSLAAKAEALELFSVEKQLTNSHNGKINLQLANDSLLALKHMSSRTMLSKESANQLAMLL
SLSLPAPAVVKSKPYWTISQILQSALPAELTCEGDRFLVKDSTVVKLDLAKESVQASFSD
LVSSINCVKGPGDALKFLNALQPLLMEFLLLDGFSVSLQDFSVPKILLEEAQESIKKQSA
VLEQSRSSKGQYVEMRVDNNLKDVKQQISDFVVKSSHLGLLIDPKSDPSVSKVVQQLGFV
GLQLYREGKFYSSRLVEDCFSNFVNRHPPVGNEVQHPPEAYGLVQSSYFHGLNPYEELVH
AISTRETIVRSSRGLTEPGTLFKSLMAILRDVVVCYDGTVRNICSNSIMQLKYREEDATD
FPSDITPGEPVGVLAATAISNPAYKAVLDASQSNNTSWELMKEILQTKVNYKNDTKDRKV
ILFLNDCSCPKKFCKEKAAIAVQGCLKKVTLEDCATDICIEYQKQTSLDGISEATPAFVG
HIHLQKAHLETINISTEDILHKCQEVSVKHGMKKGHLAHLFKKITFSTCDCSFTQKPIDG
KVPCLQFSFSEDIPMLSESVEKAVNVLADSICGVLLDTIIKGDPRIQEAKITWVGSDATS
WVKHTKKASKGEPAVEIVVEKGEALQNGDAWGIAMDACIPVMNLIDTRRSIPYGIQQVRK
LLGIACSFDQVVQRLSTTMKTVAKGILKDHLVLVANSMTCTGNLNGFNNAGYKATFRSLK
VQVPFTESTLFTPMKCFEKAAEKCHSDSLGCVVSSCSWGKHAALGTGSSFEILWNENQLK
SNKEYGDGLYDFLALVRTDQEKARYTFLDDVDYLIEDNALSPELDGMPTFDDCLEEQPTD
QGNSSWNVPATVENESADWGGWGAEKAKDKKTMPEEPAGLNTWADQSAKKDTDGGGRNWG
SNQQIKIHLGMCLRQWRMNQLIGGALKRRRIRGLCQKNQLDSILGLIRVLRRIQMEVVVT
GGSNQQIKIHLGMCLRQWRMNQLIGGAGAVKREWIRRVFQKNQLKSTLGLIRVLKRIQME
VVVTGNSDGGDGTWEKQASSCKKNVDQASWGNEPVPPSRNTWDDKASKPHTDAHNDSWGS
VAANTRTCTAKDVPWGSTQTSSAEHMDAQNDSWENVAAKAASLSDNAWNAAPVSQGNENS
EAKEPDAWDGWGFAQAKDSSTDDLNKSDASNNSKGWKSDGWAAKESRRDQRDNLGRPPMR
PVERPPRPRFELPADAKTILHEIEPIVLSVRKIFRESCDGVNLSLEDEKFIKEKILEHHP
EKDKKLSSETDHIVVNKHHTFQESRCFYVVSSDGTQTDFSYIKCLDNYVRKSYAEEPAEL
VSQMYFQRRNRDRAPAEASQPTLAETSQATPQEAQLETPAPLAETASQEALASPSATQQE
TPAATPQETPAATETAPAATPQETLAATVNKWAEKPDSDSAWGAGASDDKWA
NT seq 6099 nt   +upstreamnt  +downstreamnt
atggcacttagtagggaggcagcaccgggagctgggaggagagagtttgttactgatgtt
gatccacatactaacatcgttgcggagtccgagcgtcgtcttgcagtgcatggcgtgatc
cccgtgtttggcgagctgaagccagctctgacaacagctgatgcagcccggctattcgcc
gagcacttcggcactactgcctctgctgtccgagtaacaagtcatggaccatgtgagttt
ctcttgttcttcactgatgcagccaaggcgatgtccaagaccctaccgttcaaggtcagg
gtgtaccttgagagcgttccggagcatgcacacgacgtcgtctccgtgtctcccttgttc
gccggcaaagccatggtggacttccaggttaataaactagcgatggaggaggaccaatct
gcagtactggtcgctgaaggttccatcaagagcatcaaacttagcctatccaccgaggct
gagatatgtacttactctataaacgactgtcctgttactcatcccagtcaacttgggaat
cctttccttggcttaccacttgagtcagggaaatgcgagtcatgtggtgcctctgaaaat
ggcaaatgcgaagggcattttgggtacattgagctgcctgtgcctatatatcatccatgc
catgtcagtgaacttaggcaattactgaccttggtatgtttgaagtgccgtcgtatgaag
aaagcaaagggcaaacagagcaatggaaaggaaaatgtgtcagtaacggcatgccactac
gctgactgtcgggctctcccggcactatctgtgaaggaaaccaagacaacagatggtgtt
cgtttagagctgaaagcatccccgaagaaacacatgacggaacgttcttggaacttcctt
gaccaatatggatttcactatggtggagcctcccacaataggatactgcttccagaagag
gctctgaatatattgaagaagattccagatgagacgaaaaaaaagctagctgcacgggga
tacattgctcagtctggttatgtgatgaaatatcttccagtaccccctaactgcctctat
attccagaattcacagacgggcagagcatcatgtcctatgacatctctatatctttattg
aagaaggtacttcaaaagatagagcagataaaaaaatcaagagctggtcccccaaacttc
aaatcacatgatgttgaatcaagtgatttacaactttctattggccaatacatacagctc
aggggtactacaaagggtcctcaagacgcaaagagatatgcaattagcactgattcatcg
catttatcaacaaaacaatggttagataagatgaggacattgttcatcagcaaagggtca
ggattttcatcacgtagtgtacttactggagatccttacattggagtagatgtagttggc
ctgccttctgaagtggcaaaaagaataacttttgaagaacaggttacagacatcaacatt
aacagattgcaagaggttgttgacaagggagactgtttgacctacagagatggtgaaaca
acatatgcaatcactgtaggatcaaaaggatatacaacacttaaagtgggtcaaacgatc
agtagaagaatcgttgatggtgatgttgtgttcctgaacaggccacctagtactcacaag
cattctctccaggcatttaaagtatacatccacgatgatcatacagtcaaaatcaatccc
cttatatgctctcctcttgcagcagattttgacggtgattgtgtgcatatttattaccct
cagtcacttgctgcaaaagctgaagccttggagcttttcagtgtggagaagcaactgacg
aattcacacaacggaaaaataaacctacagctagctaatgacagtttgctagctctgaaa
cacatgtcttcaagaaccatgttaagcaaagaatcagctaaccagctggccatgcttctg
tccctttctcttcctgcccctgctgtggtcaagtcaaagccatactggacaatctcacaa
atattgcaaagtgcgttgccagcagaattgacttgtgaaggggacagattcctagtcaag
gacagcaccgtcgtaaaactggatcttgcaaaagaatccgtccaggcctcattctcggat
ctagtgtcttccattaattgtgtaaagggtccaggagatgcactcaaattcttaaatgcg
ctgcagcccttgttgatggaatttttacttctggatggttttagtgtaagtctgcaagat
tttagtgtgcccaagattctgttggaagaagcacaggaaagcataaaaaaacagtctgct
gtactggagcagtcaaggtcctcgaaaggccagtatgtggaaatgcgggttgacaacaat
ctaaaggacgtcaaacaacaaatttcagattttgtcgtgaagtcctctcatcttggtctt
ttgattgacccaaagagtgacccatcagtgtcaaaagtagttcaacagcttggttttgtt
ggtctgcaactctaccgcgaggggaagttctactcgagccgtctcgtggaggactgtttc
tcaaattttgtgaataggcacccacctgttggaaatgaagtccagcatcctccagaagct
tatggtcttgtgcaaagttcatatttccatggtctcaatccttatgaggagctggtacat
gctatatccacgagagaaactatcgtccgctcctcaagagggttgacagaaccaggaact
ctgttcaagagtctaatggccatcctgcgagatgtagttgtatgctatgatggaactgtg
agaaacatctgcagcaattcaatcatgcaacttaagtacagagaagaagacgccaccgat
tttccaagtgatataactcctggagaaccggtgggtgtcttagctgccactgctatctcc
aaccctgcttacaaggctgtcttggatgcttctcaaagtaataatacttcatgggagttg
atgaaggaaatacttcagacgaaagttaactataaaaatgatacaaaagatcgaaaagtt
atcctgtttcttaatgactgctcttgtcccaagaagttctgcaaagaaaaggctgctatt
gcagtacagggctgtctaaagaaagtcactctagaggactgtgccactgatatctgcatt
gagtatcagaaacaaacaagtttagatggaatttcagaagctaccccagcatttgttggt
catattcaccttcaaaaggcgcatttagaaacgataaacattagcaccgaggatattctt
cataaatgccaagaagtttctgtgaaacatgggatgaagaaaggacatcttgcgcacctg
tttaaaaagattactttctctacttgtgattgttccttcacacaaaagccgattgatggg
aaggttccatgtttgcagttttctttttctgaggacattcctatgttatctgaatccgtt
gagaaagctgtgaatgtgctagccgattctatatgtggtgtgcttctggatactattata
aaaggtgatcctcgaattcaagaggccaaaattacgtgggttgggtctgatgcaacgtct
tgggtaaaacacacaaagaaggcatcaaagggtgagccagcagtagaaattgttgttgag
aaaggtgaagctttgcaaaacggtgacgcatggggaatagcgatggatgcatgcatccca
gtaatgaacctcatcgacacacgaaggtccataccttatggtattcagcaagtgcggaaa
cttcttggcatagcatgctcctttgatcaagttgtccagcgcctttcgacaactatgaaa
acggttgctaaaggaattcttaaggaccatctggtacttgtggcaaacagcatgacatgc
accggtaacttgaatgggttcaacaatgctggttataaggcaaccttccgttcattaaaa
gttcaagtaccttttacagagtccaccttattcacccctatgaaatgctttgagaaggct
gccgagaaatgccattcggattcattgggttgtgtggtctcatcatgttcgtggggcaag
catgcagcacttggcactgggtcatcttttgagattctttggaacgaaaatcagctaaaa
agcaacaaggagtatggtgatggcctgtatgatttcctggccttggtgaggactgaccaa
gaaaaggctagatacacattcttggacgatgtggactaccttattgaagacaacgcgtta
tcaccagaattggatggtatgcctacttttgacgattgtcttgaagaacagccaacagat
caaggcaattcgtcttggaatgtccccgcgacagtggagaatgaatccgctgattgggga
ggctggggcgctgaaaaggcgaaggataagaagactatgccagaagaaccagctggactc
aatacttgggctgatcagagtgctaagaaggatacagatggaggcggtcgtaactgggga
agcaaccagcagatcaagattcatcttggaatgtgcctgcggcagtggagaatgaatcag
ctgattgggggggcgctgaaaaggcgaaggataagaggactatgccagaagaaccagctg
gactcaatacttgggctgatcagagtgctaagaaggatacagatggaggtggtcgtaact
gggggaagcaaccagcagatcaagattcatcttggaatgtgcctgcggcagtggagaatg
aatcagctgattgggggggctggggcagtgaaaagggaatggataagaagagtgttccag
aagaaccagctgaaatcaacactagggctgatcagagttctaaaaaggattcagatggag
gtggtggtaactgggaattctgatggaggtgatggtacctgggaaaagcaagccagctct
tgcaagaaaaatgttgaccaggcctcttggggaaacgagccagtgccaccgtcaagaaat
acatgggacgacaaggcgtctaagccgcatactgatgcacataatgattcctggggaagt
gtggcagctaatactcggacttgtactgcaaaagatgttccttggggaagtactcaaact
tcttctgctgagcatatggatgcacagaatgattcctgggagaatgtggctgcaaaggct
gcttcactgtcagataatgcatggaatgctgctccagtttcccagggaaatgagaattca
gaagcaaaggagccagatgcttgggatggctggggttttgctcaagccaaggactccagt
actgatgatttgaacaagagcgatgcttctaacaatagcaaaggctggaaatcagatgga
tgggctgccaaagaaagtcggagagaccaaagagacaatctgggtaggcccccaatgaga
cctgtggagaggccaccaagaccacggttcgaactaccagctgatgcaaaaacgatttta
cacgaaattgaacctattgtattatcggtcagaaagatcttccgtgaatcatgtgatggt
gtaaatctttccctggaggatgagaagtttatcaaggagaagattctggagcaccatcct
gaaaaggataagaagctgtcctctgaaactgatcatatagtggttaacaagcaccacacg
ttccaggagagtcgctgcttttacgtggtgtcatcagatggaacacagacagacttctcc
tacatcaagtgcctggacaattacgtgaggaagagctatgcagaagagcccgccgaactg
gtctcccagatgtacttccagaggcgcaaccgtgatcgagcaccagctgaggcttctcaa
ccaactctagcagagacctcacaagccactccacaggaggctcagctagagactccagcc
ccacttgcagaaacagcttcacaagaggctctggcttctccgtcagcgacccagcaagag
accccagcggcgactcctcaggagactccggcagcgacagagaccgccccagcggcgact
ccacaagagactctggcagcgacagtcaacaagtgggctgaaaagccagattctgattca
gcgtggggcgcaggagcctccgatgataagtgggcctga

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