Lolium rigidum (rigid ryegrass): 124689505
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Entry
124689505 CDS
T09103
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
lrd
Lolium rigidum (rigid ryegrass)
Pathway
lrd03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
lrd00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124689505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
lrd03041
]
124689505
Enzymes [BR:
lrd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124689505
Spliceosome [BR:
lrd03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124689505
Complex C
U5 SnRNP specific factors
124689505
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
ResIII
AAA_30
AAA_22
Helicase_C
Motif
Other DBs
NCBI-GeneID:
124689505
NCBI-ProteinID:
XP_047078984
LinkDB
All DBs
Position
2:36001584..36007300
Genome browser
AA seq
1309 aa
AA seq
DB search
MAPNHEEVSNLAHILNNFGNVTGLFTNFEKSLVAPIRCNEVDLIHVLQHLPATTTTFPMK
YLGLPLAVKRLKRSHFQYIEDKAAARLAPLYGRYFNNAGRMALVKSVLSSQAIYPLTALE
VHSAANLLDKNNLVKYDRKTGYFQVTDLGRIASYYYISHGTISTYNEYLKPTMGDIELCR
LFSLSEEFKYVSVRQDEKMELAKLLDRVPIPVKESLEEPSAKINVLLQAYISRLKLEGLS
LGSDMVYIRQSAGRLLRALFEIVLKRGWAQLAEKALNLCKMIDKQMWSVQTPLRQFPGIP
KEILMKLEKKELAWERYYDLSSQEIGELIRFPKMGKQLHRCIHQLPKLNLSAHVQPITRT
VLGFELTITPDFQWDDKVHGYVEAFWVIVEDNDGEYILHHEYFMLKKQYVDEDHTLHFTV
PIYEPLPPQYFIRVVSDKWLGSQTILPVCFRHLILPEKYAPPTELLDLQPLPVTALRNAR
YEGLYSAFKHFNPIQTQVFTVLYNSDDSVLVAAPTGSGKTICAEFAILRNHQKAVSGETN
MRVVYIAPIEALAKERFRDWSKKFGEFARVVELTGETAADLKLLDKGEIIISTPEKWDAL
SRRWKQRKHIQQVSLFIVDELHLIGSEKGHVLEVVVSRMRRISSHIGSNIRIVALSASLG
NAKDLGEWIGATSHGLFNFPPAVRPVPLEIHIQGVDIANFEARMQAMAKPTYTAITQHAK
SGKPALVFVPTRKHARLTALDLCAYSSAEAGGTPFLLGSTDEMDTFIGGVNEETLQNTLR
CGVGYLHEGLSDLDQELVTQLFLGGRIQVCVASSTMCWGRSLPAHLVVVMGTQYYDGRES
AHTDYPITDLLQMMGHASRPLQDSSGKCVILCHAPRKEYYKKFLFEAFPVESHLHHFLHD
HMNAEVVVGVVENKQDAVDYLTWTFMYRRLNKNPNYYNLQGVSHRHLSDHLSELIETVLN
DLESSKCVSVEEDMYLKPLNLGLIAAYYYISYTTIERFSSMLTQKTKMKGLLEILASASE
YAELPTRPGEEEYIERLVRHQRFSIDKPKYGDPHVKANALLQSHFARHTVVGNLAADQRE
ILLSAHRLLQAMVDVISSSGWLTLALNAMELSQMVTQGMWDRDSVLLQLPHFTKDLARRC
LENKEKPIESIFDLAEMSADEMRDLLQLSNSQLQDIGEFFKRFPNVDMAYEVREGDDIRA
GDNVTLQVTLERDMANLPSSEVGPVHAPRFPKPKEEGWWLVVGDASGSTKQLLAIKRVAL
QKRARVKLEFTAAAEPGRKDYMIYLMSDSYLGCDQEYEFTVDVKDAGAD
NT seq
3930 nt
NT seq
+upstream
nt +downstream
nt
atggcccccaaccatgaggaggtttccaaccttgcgcatatattgaacaactttggcaat
gtcaccggcctcttcactaacttcgagaagagccttgtggcacctatccggtgcaacgag
gtggaccttatacatgttctacaacaccttccggctactaccacgaccttcccaatgaaa
tatcttgggctccctcttgcggtcaagcgcctcaaaagatctcatttccaatacatcgaa
gacaaagcggcggcgcgcctcgcgcctctctatggaagatatttcaacaacgccgggagg
atggcacttgtcaaatcggtcctctcctctcaagccatctaccccctcacagcccttgag
gtacactctgctgcaaatttgttggataagaataatttggtgaagtatgacaggaaaaca
ggatactttcaggttactgaccttggaaggattgccagttattactatattagtcatggg
actatttcgacatataatgagtatctcaagcccacaatgggtgatattgagctctgtcgc
ctgttctccctgagtgaagagttcaagtatgttagtgtcaggcaagatgagaaaatggag
ctggcaaaacttttggatcgtgtgccaattcctgtaaaagagagtctggaggagcccagt
gcaaagattaatgttctgctgcaagcatatatatctaggctgaaattggagggcctctct
cttggttctgatatggtctacatcagacagagtgctggacgcctcttacgagcactattt
gagatagttttgaagagaggatgggctcaattagcggagaaggctctcaatctttgcaag
atgattgataagcagatgtggagtgtccaaacacccttgcgccagtttcctggtattcca
aaggaaatcctgatgaaactggagaaaaaagagttggcttgggagaggtactatgaccta
tcatcacaggaaatcggtgagctaattcgtttcccaaagatggggaagcagctgcacagg
tgcatccaccagttaccaaagttgaacctgtctgcccatgttcaacctattactcgcaca
gttttgggttttgaattgacaataacacctgatttccagtgggatgataaggtacatgga
tatgttgaggccttttgggttatagttgaggacaatgatggcgagtacattcttcaccat
gagtacttcatgcttaagaagcagtatgtggatgaagatcacacacttcactttacagtg
ccaatatatgagccattgcctcctcagtattttatacgtgttgtgtctgacaagtggctt
ggttcacagacaattcttcctgtctgttttaggcacttgattcttccagaaaaatatgct
cctccaactgaattgcttgatctgcaaccgctacctgttactgcattgaggaatgcacga
tatgaaggtctttatagtgcttttaaacatttcaaccccatccagactcaagtgttcact
gtcctgtataacagtgatgacagtgtgttggttgctgcgccaacaggcagtggcaagaca
atatgcgcagaatttgctatactaaggaaccatcagaaggcagtatctggggaaactaac
atgcgggttgtgtatatagctcctattgaggctcttgcgaaagaaagattcagggactgg
tcaaagaaatttggagaatttgcccgtgtagtggagctaactggtgaaactgcagctgat
ttgaagcttcttgacaaaggggagatcattattagtactcctgaaaagtgggatgcactt
tctcgacgctggaagcagcgaaagcacatccaacaagtcagcttatttattgttgacgag
cttcatttaattggatctgaaaagggacatgtcctggaagtcgttgtttctcggatgagg
cgtatttcaagccatattggcagtaacatccggattgtggcgctttcagcatcacttgga
aatgctaaagatcttggagaatggatcggtgccacctctcatggtcttttcaacttccct
ccagcagtgcggccagttccattggaaatacatattcagggtgtggatatagcaaatttt
gaggcaagaatgcaagcaatggcaaagcctacatacactgctatcacacaacatgcaaag
agtggtaagcctgccctggtgtttgtaccgacacgtaagcatgcaaggttgactgcattg
gacctgtgtgcatactcaagtgctgaggctggtggaacgccattccttcttgggtcgaca
gatgagatggatacttttattggaggtgtcaatgaagaaacacttcaaaatacactgaga
tgcggtgtgggctacttgcatgagggccttagtgaccttgaccaggaacttgtaacccag
cttttccttggtgggaggatccaagtgtgtgttgcaagtagcacaatgtgctgggggaga
tcgttgcctgctcatctagttgttgtgatgggaacccaatattatgatggcagggagagt
gctcatactgattatccaatcactgatctgctacagatgatgggtcacgctagcaggcct
cttcaggatagctccgggaagtgtgttatattgtgccatgcacctcggaaggaatactac
aagaagttcctctttgaggccttccctgtggagagtcatcttcaccatttcttgcatgac
catatgaatgctgaggttgttgtcggcgttgtagaaaacaagcaagatgccgtggactat
cttacctggactttcatgtaccggcggctgaacaagaaccctaactactacaatctgcag
ggtgtaagtcacaggcatctgtcagatcatctttctgagctaattgagacagtgttgaat
gacctagaatcaagcaagtgtgtatctgtagaggaggatatgtacctgaagccgctcaac
cttggtctcattgctgcatactactacattagctacacgactattgaacggttcagttcg
atgctcactcagaagacgaagatgaaaggcctcctggaaattctagcttctgcatcagag
tatgcagagcttccaactcgcccaggtgaagaagaatatattgagaggctagtccgtcac
cagagattttctattgacaagcccaagtatggtgatccacacgtgaaggccaacgctcta
ctgcaatcccactttgcaaggcacacggtggtagggaacctggcagctgaccagcgggag
atcctcctttctgcccacagattgctccaggcaatggttgacgttatctccagcagtgga
tggctcactcttgctctgaatgcaatggagttgagtcagatggtgacccaaggcatgtgg
gatcgtgactctgtgctgctccagcttccacacttcaccaaggacctagcccggagatgc
ctggaaaacaaagagaagcccatcgagagcatctttgatctggctgagatgagtgctgac
gagatgcgggatctgctgcagctatcgaactctcagctgcaggacatcggcgaattcttc
aaacggttccccaacgtcgacatggcttatgaggtccgcgagggcgacgacatcagggct
ggcgacaacgtaaccttgcaggtcactctggagcgtgacatggcgaacctgccatcttct
gaggttggcccggtccacgcccccaggttcccgaagcccaaggaggaaggctggtggctg
gtggtcggtgacgcctctggctccaccaagcagctgctggcgattaagagggtcgccctc
cagaagagggcacgtgtgaagcttgagttcaccgccgccgcggagccagggaggaaggac
tacatgatctacctgatgtccgactcctacctgggctgtgaccaggagtacgagttcacc
gtcgacgtgaaggatgctggagcagattga
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