KEGG   Lolium rigidum (rigid ryegrass): 124691313
Entry
124691313         CDS       T09103                                 
Name
(RefSeq) splicing factor 3B subunit 1-like
  KO
K12828  splicing factor 3B subunit 1
Organism
lrd  Lolium rigidum (rigid ryegrass)
Pathway
lrd03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:lrd00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    124691313
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:lrd03041]
    124691313
   03036 Chromosome and associated proteins [BR:lrd03036]
    124691313
Spliceosome [BR:lrd03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    124691313
 Complex B
    124691313
 Complex C
   U2 SnRNP specific factors
    124691313
Chromosome and associated proteins [BR:lrd03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    124691313
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 HEAT_2 Cnd1 Htt_N-HEAT_1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N UME IFRD
Other DBs
NCBI-GeneID: 124691313
NCBI-ProteinID: XP_047080542
LinkDB
Position
2:complement(13313806..13318796)
AA seq 1283 aa
MDGIDAELARAQDERRKLEEALAAGAPMAVSSVTFDKDLYGGEASGPDRFAGYDTSIPAS
EDDAPEDDSADPAAANPAARRLASYTGHALAAADIPRSDDDGVPAKRSQRIIDREDDYRR
RRLDRIISPERHDPFAAGEKTPDPSVRTYGDAMRESKVQQEKEHVLREIAKKKREEEEKV
KEKKAAAPEQPPAAAPTKRRNRWDQSQDGDAGVGAKKAKTASDWDAPDATPGIGRWDATP
GRVGDATPSVRRNRWDETPTPGRMADADATPAAGGITPGATPSGAWDATPKLPGGLVTPT
PKKQRSRWDETPASMGSATPGGTAATPASYTPGATPFGAENLATPTPGHLAHGAVTPEQW
QLMKWERDIEERNRPLTDEELDSMLPQEGYKILEPPASYQPIRTPARKLLATPTPLTTPL
YNIPEENRGQQYDVPREMTGGLPDMKPEDYQYFGPLLDEDNEEQLTPEEQKERKIMKLLF
KVKNGTPPQRKTALRQLTDKAREFGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRVLYK
LDELVRPFVHKILVVIEPLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDE
YVRNTTARAFSVVASALGIPALLPFLKAVCQSKKSWQARHTGIKICQQIAILMGCAVLPH
LKSLVEIIEHGLSDENQKVRTITALSLAALAEAAAPYGIESFDSVLKPLWKGIRSHRGKV
LAAFLKAIGFIIPLMDALYASYYTKEVMQVLIREFQSPDEEMKKIVLKVVKQCVSTEGVE
ADYIRSDILPEFFKHFWVRRMALDRRNYKQLVETTVEMANKVGVTGIVGKIVEDLKDESE
PYRRMVMETIEKVVANLGASDIDPRLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNAL
GQRVKPYLPQICGTIKWRLNNKSAKVRQQAADLISRIAIVMKQCQEEQLMGHLGVVLYEY
LGEEYPEVLGSILGALKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGR
IADRGAEFVPAREWMRICFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNL
KVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEM
GKDYIYAVTPLLEDALMDRDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFE
TSPHVINAVMEAIEGMRVALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALV
ASYPALGDDGDNIFSRPELAMFV
NT seq 3852 nt   +upstreamnt  +downstreamnt
atggacggaatcgacgcggagctcgcgcgcgcgcaggacgagcgccggaagctggaggag
gccctggcggcgggcgcgcccatggccgtctcctccgtcaccttcgacaaggacctctac
ggcggggaagcctcggggcccgaccgattcgccggctacgacacctccatcccggcctca
gaggacgacgcgcccgaggatgacagcgccgatcccgccgccgccaacccggccgcgcgc
cgcctcgcgtcctacacgggccacgccctcgccgccgccgacatcccccggtcggacgac
gacggggtccccgccaagaggtcccagcgcatcatcgaccgcgaggacgactaccgccgc
cgccgcctcgaccgcatcatctcgcccgagcgccacgaccccttcgccgccggggagaag
accccggacccctccgtcaggacctacggtgacgccatgcgcgagagcaaggtgcagcag
gagaaggagcacgtgctgcgcgagatcgctaagaagaagagggaggaggaagagaaagtc
aaggagaagaaggctgctgcgcctgagcagccaccagccgccgcgccgacgaagcggcgc
aacagatgggatcagtcgcaggacggagatgctggtgttggggccaagaaggcgaagacc
gcctccgactgggatgcacctgacgcaactcctgggattggacgctgggatgccacccct
gggcgtgttggagatgccacaccctctgtgaggaggaacaggtgggatgagacaccaact
ccagggaggatggctgatgcagatgcaactccagcagctggtggcattactccaggagcc
accccttctggggcgtgggatgctactcctaagctgcccggtgggcttgtcacaccgact
cccaagaagcagaggtcacggtgggatgagacaccggcgagtatggggagtgcaacgcct
ggtggtacggcggcaacgcctgcgtcttacactcctggagcaacgccgtttggagcagaa
aaccttgcaacgccaacacctggccaccttgctcatggtgcggtgaccccggagcagtgg
cagctcatgaagtgggagagggacattgaggagcggaacaggcctctcactgatgaggag
cttgactccatgctcccgcaggagggttacaagattcttgaacctccagcttcataccag
ccaatacgtactccggcgaggaagctgcttgctacgccaacacctctgaccacaccactt
tataatattccagaggagaatcgtggacagcagtatgatgtgcccagggaaatgactggt
gggttgccagacatgaagccagaagattaccagtactttggaccattgctggatgaggac
aacgaggagcagctaaccccagaggagcagaaggagaggaagatcatgaaacttttgttc
aaggttaagaatggcacgcccccgcagcggaagacagcactccggcagctcacagacaaa
gcacgggaatttggtgctggtcctctgttcaataaaatcctgccattgctcatgcaacca
acacttgaggaccaggagcggcatctcctggtgaaggtcattgatagggtgctgtataaa
ctggatgagctggtccgtccatttgtgcacaagattctggtggttattgaaccactactg
attgatgaggattactatgctcgtgttgagggcagggagattatttcaaacctgagcaaa
gctgctggtcttgctacaatgattgctgccatgagaccagatattgataacattgatgag
tatgtgagaaatacaactgctagggcattcagtgtggttgcttctgctttgggtatccca
gccctccttccattcttgaaggctgtctgtcagagtaagaagtcatggcaagctcggcac
actggtatcaagatctgtcagcagattgctattctcatgggctgcgctgttctgcctcac
cttaagagcctagttgagattattgagcatggtcttagtgatgagaaccagaaagtacgg
acgatcactgccctctctctcgctgcacttgctgaagctgctgcaccctatggtatagaa
agttttgatagtgtgttgaagcctctctggaagggtatcagatctcaccgtggaaaggtt
cttgctgccttcttgaaggctattggtttcatcatacctcttatggatgctctgtatgcc
agttactacactaaggaggtgatgcaagtcctaattagggaattccagtcaccagacgaa
gagatgaagaagattgtcctgaaggttgttaaacagtgtgtcagtacagagggtgttgag
gctgattatatccggtctgacatccttccagaattcttcaaacacttctgggttaggagg
atggctctagatcgtaggaactataagcaacttgtggaaacaaccgtggagatggcaaac
aaggtgggagttactggtatcgttggtaagattgtggaggatctgaaagatgaaagtgag
ccttataggagaatggtgatggaaacaattgagaaggtggtggctaatttgggtgcctca
gatattgatcctcgtctggaggagctacttattgatggcatcctgtatgctttccaagag
cagacaagtgatgatgcaaatgtaatgcttaatggttttggagcggttgtgaatgcactt
ggccagagggtcaagccttaccttcctcagatatgtggtaccatcaagtggcggttgaac
aacaagagcgcaaaagttaggcagcaagctgctgatttgatctcaaggatagccattgtg
atgaagcagtgtcaggaggagcagcttatgggtcatctgggtgttgtgctgtatgagtac
ttgggagaggagtatcctgaggtactgggttcaattcttggagctttgaaggctattgtt
aatgtcattggtatgaccaagatgacaccgcctatcaaggatcttctacctcggttgacc
cccatcttgaagaataggcatgagaaggtccaagagaactgcattgatctagttggtagg
attgctgatcgtggagcagaatttgtaccagcaagggagtggatgaggatttgctttgag
ctgctggaaatgttgaaggctcacaagaagggcatcagaagagctactgtgaacacattt
ggttatattgcaaaggcaattgggccacaggatgtgctggccactctgttgaataacttg
aaagtgcaggagcggcagaaccgtgtttgcactactgtagcaattgctattgttgctgaa
acttgctcgcctttcacagttttgcctgccctcatgaatgagtaccgggttccggagctc
aatgtccagaatggtgttttgaaatctctctcatttctctttgagtatattggtgagatg
ggcaaagattacatatatgctgtcactcccttgcttgaagatgctctaatggacagggat
ctagttcaccggcaaactgctgcatctgctgttaaacatatggctctaggggttgctggc
ttgggctgtgaagatgctcttgtccatttgcttaactttatctggcccaatatattcgag
acatctcctcatgtcataaatgctgtcatggaggctattgagggaatgagagttgctcta
ggtgcagctgtggttctgaattattgcctccaaggtcttttccatccagcaaggaaagta
cgtgaagtatattggaagatctacaactcgctatatattggtgcacaagatgcacttgtt
gcttcttatcctgcactgggggatgatggagacaatatcttcagccgtccagagctagcc
atgttcgtctga

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